Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25527 | 3' | -55.8 | NC_005337.1 | + | 24142 | 0.66 | 0.89752 |
Target: 5'- cCAACACaaccacaCGCAGCCAUGGcuuccuACGAc- -3' miRNA: 3'- -GUUGUGgcg----GCGUCGGUACC------UGCUuc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 94640 | 0.66 | 0.89752 |
Target: 5'- -cGCGCCGCUGCGuGUaCAUGGcccGCGAGa -3' miRNA: 3'- guUGUGGCGGCGU-CG-GUACC---UGCUUc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 50947 | 0.66 | 0.89752 |
Target: 5'- gGGCGCCucgcGCCGCgccccuAGCCGgucgaccGGGCGggGc -3' miRNA: 3'- gUUGUGG----CGGCG------UCGGUa------CCUGCuuC- -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 76843 | 0.66 | 0.89752 |
Target: 5'- -cGCAgCGCaCGCGGUagAUGGACGGGc -3' miRNA: 3'- guUGUgGCG-GCGUCGg-UACCUGCUUc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 21409 | 0.66 | 0.89752 |
Target: 5'- gCGGCAUCgucgacguggGCCGCGGCCAgcucGCGGAGc -3' miRNA: 3'- -GUUGUGG----------CGGCGUCGGUacc-UGCUUC- -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 1211 | 0.66 | 0.89752 |
Target: 5'- cCAcCGgCGCCGCGuaCGcGGACGAAGc -3' miRNA: 3'- -GUuGUgGCGGCGUcgGUaCCUGCUUC- -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 93533 | 0.66 | 0.89752 |
Target: 5'- aCGAUGCgGCCGCAGU--UGGACa--- -3' miRNA: 3'- -GUUGUGgCGGCGUCGguACCUGcuuc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 104721 | 0.66 | 0.89752 |
Target: 5'- --cCGCCGCCGCGGCgGcGGcaucaagaucgGCGAGa -3' miRNA: 3'- guuGUGGCGGCGUCGgUaCC-----------UGCUUc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 118782 | 0.66 | 0.89752 |
Target: 5'- gCGACGCUGuCCGCAGCagcgccGACGAc- -3' miRNA: 3'- -GUUGUGGC-GGCGUCGguac--CUGCUuc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 110210 | 0.66 | 0.89752 |
Target: 5'- gAugGCgGCCGCGGCCGcGGccGCGucGc -3' miRNA: 3'- gUugUGgCGGCGUCGGUaCC--UGCuuC- -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 48644 | 0.66 | 0.89752 |
Target: 5'- gGACGCCaGCgCGCAGC--UGGACGccGu -3' miRNA: 3'- gUUGUGG-CG-GCGUCGguACCUGCuuC- -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 88512 | 0.66 | 0.89353 |
Target: 5'- gGACAgCGCCGCgcgguacgaacgcggGGCCGUGcuaGACGGc- -3' miRNA: 3'- gUUGUgGCGGCG---------------UCGGUAC---CUGCUuc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 97866 | 0.66 | 0.89353 |
Target: 5'- gGugGCCGCCGCcgugcucaaccgcauGGUCAUGGAgcaGAu- -3' miRNA: 3'- gUugUGGCGGCG---------------UCGGUACCUg--CUuc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 84081 | 0.66 | 0.890824 |
Target: 5'- aGACGCgCGCCGCAGagcgcggaCAcGGGCGcGGu -3' miRNA: 3'- gUUGUG-GCGGCGUCg-------GUaCCUGCuUC- -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 46754 | 0.66 | 0.890824 |
Target: 5'- cCAugACgggcaGCCGCuuccuGCuCGUGGACGAGc -3' miRNA: 3'- -GUugUGg----CGGCGu----CG-GUACCUGCUUc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 21066 | 0.66 | 0.890824 |
Target: 5'- --gUACuCGCCGUAGUCGUGGuccCGGAc -3' miRNA: 3'- guuGUG-GCGGCGUCGGUACCu--GCUUc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 124009 | 0.66 | 0.890824 |
Target: 5'- gAACG-CGCCGCcGCCgAUGGaggcgccccGCGAAGg -3' miRNA: 3'- gUUGUgGCGGCGuCGG-UACC---------UGCUUC- -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 6702 | 0.66 | 0.890824 |
Target: 5'- aCGGCugCGCCcgccuccagcaGCAGCCGgacaacgcGGACGucGAGg -3' miRNA: 3'- -GUUGugGCGG-----------CGUCGGUa-------CCUGC--UUC- -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 131592 | 0.66 | 0.890824 |
Target: 5'- -----aCGCCGCAGCUccGGACGu-- -3' miRNA: 3'- guugugGCGGCGUCGGuaCCUGCuuc -5' |
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25527 | 3' | -55.8 | NC_005337.1 | + | 123321 | 0.66 | 0.890824 |
Target: 5'- gAAUACgCGCuCGCuaaAGCCAgGGACGGGa -3' miRNA: 3'- gUUGUG-GCG-GCG---UCGGUaCCUGCUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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