miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 5' -53 NC_005337.1 + 87803 0.66 0.971763
Target:  5'- cGGCUgcUGCCcgGGAgCUCGcGGcgcGCCg -3'
miRNA:   3'- -CCGAa-ACGGuaCCU-GAGCcUCua-CGG- -5'
25527 5' -53 NC_005337.1 + 39859 0.66 0.971475
Target:  5'- cGGCUUcggcaucagcgucUGCCGcUGGA--CGGAGcUGCUg -3'
miRNA:   3'- -CCGAA-------------ACGGU-ACCUgaGCCUCuACGG- -5'
25527 5' -53 NC_005337.1 + 47525 0.66 0.968778
Target:  5'- uGGCcaucgUGCCGgagcgGGACcucgUGGGccuGAUGCCg -3'
miRNA:   3'- -CCGaa---ACGGUa----CCUGa---GCCU---CUACGG- -5'
25527 5' -53 NC_005337.1 + 119690 0.66 0.968778
Target:  5'- uGGCcggcGCCAucgUGGAC-CGGAGccgcgagGCCg -3'
miRNA:   3'- -CCGaaa-CGGU---ACCUGaGCCUCua-----CGG- -5'
25527 5' -53 NC_005337.1 + 2814 0.66 0.965574
Target:  5'- aGGCgcUGCUgcaGGACgucaCGGuAGAUGCUg -3'
miRNA:   3'- -CCGaaACGGua-CCUGa---GCC-UCUACGG- -5'
25527 5' -53 NC_005337.1 + 97104 0.66 0.965574
Target:  5'- uGCUggUGCCgcaGUGGcGCUCGGcGGUGgCg -3'
miRNA:   3'- cCGAa-ACGG---UACC-UGAGCCuCUACgG- -5'
25527 5' -53 NC_005337.1 + 119554 0.66 0.962146
Target:  5'- cGGCUg-GCgAUGGGCgucgUGGAGA-GCa -3'
miRNA:   3'- -CCGAaaCGgUACCUGa---GCCUCUaCGg -5'
25527 5' -53 NC_005337.1 + 59874 0.66 0.958487
Target:  5'- uGGCggUGCCAga-GCccCGGAGAUGUa -3'
miRNA:   3'- -CCGaaACGGUaccUGa-GCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 107021 0.66 0.958487
Target:  5'- cGGUUcacGCuCAcGaACUCGGAGAUGCUg -3'
miRNA:   3'- -CCGAaa-CG-GUaCcUGAGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 88754 0.66 0.954594
Target:  5'- cGGCUcccgacGCCGaGGACcCGGAGgcGCa -3'
miRNA:   3'- -CCGAaa----CGGUaCCUGaGCCUCuaCGg -5'
25527 5' -53 NC_005337.1 + 117183 0.66 0.954594
Target:  5'- cGCguucGCCAUGGAagagcUGGAG-UGCCg -3'
miRNA:   3'- cCGaaa-CGGUACCUga---GCCUCuACGG- -5'
25527 5' -53 NC_005337.1 + 10393 0.66 0.954594
Target:  5'- aGCUggUGCUcgGG-CUgUGGAGGUGCg -3'
miRNA:   3'- cCGAa-ACGGuaCCuGA-GCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 29025 0.67 0.95046
Target:  5'- cGGCcccaaGCCGUGGuggUGGGGgcGCCa -3'
miRNA:   3'- -CCGaaa--CGGUACCugaGCCUCuaCGG- -5'
25527 5' -53 NC_005337.1 + 73898 0.67 0.95046
Target:  5'- aGGUc-UGCC-UGGGCa-GcGAGAUGCCg -3'
miRNA:   3'- -CCGaaACGGuACCUGagC-CUCUACGG- -5'
25527 5' -53 NC_005337.1 + 128814 0.67 0.95046
Target:  5'- cGGCUgcGCCcUGccCcCGGAGAUGCUc -3'
miRNA:   3'- -CCGAaaCGGuACcuGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 88263 0.67 0.941458
Target:  5'- cGGCgc-GCCGgcGGGCgccgCGGAGGacaugGCCg -3'
miRNA:   3'- -CCGaaaCGGUa-CCUGa---GCCUCUa----CGG- -5'
25527 5' -53 NC_005337.1 + 10594 0.67 0.936584
Target:  5'- cGGCgu--CCGUGGACaccaugCGGAGGUGgUa -3'
miRNA:   3'- -CCGaaacGGUACCUGa-----GCCUCUACgG- -5'
25527 5' -53 NC_005337.1 + 50434 0.67 0.936584
Target:  5'- cGCUUccGCCcgGGAUUCGG-GcgGCg -3'
miRNA:   3'- cCGAAa-CGGuaCCUGAGCCuCuaCGg -5'
25527 5' -53 NC_005337.1 + 78982 0.67 0.931459
Target:  5'- aGCgugUUGC---GGAUguagUCGGGGAUGCCg -3'
miRNA:   3'- cCGa--AACGguaCCUG----AGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 105528 0.67 0.931459
Target:  5'- cGGCc--GCCAUGGACgcgacuggaaCGGuGgcGCCa -3'
miRNA:   3'- -CCGaaaCGGUACCUGa---------GCCuCuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.