miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25531 5' -54.2 NC_005337.1 + 133709 0.72 0.634168
Target:  5'- cGCGCGGCcgcGGCGUACgCGCggcgguggcggaguGGCGCCGg -3'
miRNA:   3'- -CGUGUCGaa-CUGCAUG-GCG--------------UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 133709 0.72 0.634168
Target:  5'- cGCGCGGCcgcGGCGUACgCGCggcgguggcggaguGGCGCCGg -3'
miRNA:   3'- -CGUGUCGaa-CUGCAUG-GCG--------------UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 133510 0.69 0.834106
Target:  5'- cGCGCAGCacaUGGCcgccgucgagGCCGCGgGCGCCGc -3'
miRNA:   3'- -CGUGUCGa--ACUGca--------UGGCGU-CGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 133510 0.69 0.834106
Target:  5'- cGCGCAGCacaUGGCcgccgucgagGCCGCGgGCGCCGc -3'
miRNA:   3'- -CGUGUCGa--ACUGca--------UGGCGU-CGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 133142 0.7 0.750662
Target:  5'- cGCGgAGCUggucgcgcGCGUGCUGCGGCugCu -3'
miRNA:   3'- -CGUgUCGAac------UGCAUGGCGUCGugGu -5'
25531 5' -54.2 NC_005337.1 + 133142 0.7 0.750662
Target:  5'- cGCGgAGCUggucgcgcGCGUGCUGCGGCugCu -3'
miRNA:   3'- -CGUgUCGAac------UGCAUGGCGUCGugGu -5'
25531 5' -54.2 NC_005337.1 + 133050 0.67 0.90844
Target:  5'- cGCAUucguAGCUUcguccGCGUA-CGCGGCGCCGg -3'
miRNA:   3'- -CGUG----UCGAAc----UGCAUgGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 132814 0.67 0.888564
Target:  5'- gGCAguGCgUGGCGUACgugguCGC-GCACCu -3'
miRNA:   3'- -CGUguCGaACUGCAUG-----GCGuCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 131729 0.71 0.689651
Target:  5'- cGgGCAGCUccGCGUGCCGCAGaACUg -3'
miRNA:   3'- -CgUGUCGAacUGCAUGGCGUCgUGGu -5'
25531 5' -54.2 NC_005337.1 + 131376 0.67 0.881456
Target:  5'- cGCGCGGU---ACGUcuucgACCGCGGgGCCGu -3'
miRNA:   3'- -CGUGUCGaacUGCA-----UGGCGUCgUGGU- -5'
25531 5' -54.2 NC_005337.1 + 130805 0.66 0.920453
Target:  5'- cGCGCAGUcgcGACG-ACC-CAGUGCCGc -3'
miRNA:   3'- -CGUGUCGaa-CUGCaUGGcGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 130643 0.7 0.76926
Target:  5'- aGCugGGCgcgGACGUGCgCGCgagggacgucuacGGCGCUAc -3'
miRNA:   3'- -CGugUCGaa-CUGCAUG-GCG-------------UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 130628 0.74 0.533313
Target:  5'- uGCGCGGac-GACGagGCCGCGGCGCUg -3'
miRNA:   3'- -CGUGUCgaaCUGCa-UGGCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 128518 0.68 0.858752
Target:  5'- cGCGCGGCUgccGCccGCCGCcGUGCCAg -3'
miRNA:   3'- -CGUGUCGAac-UGcaUGGCGuCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 127944 0.66 0.926082
Target:  5'- uGUACGGgaUGACGUcgcugGCCGCGcucauGCGCUc -3'
miRNA:   3'- -CGUGUCgaACUGCA-----UGGCGU-----CGUGGu -5'
25531 5' -54.2 NC_005337.1 + 127859 0.71 0.696903
Target:  5'- cGCGCuGCUguGCGUGCacagucugguggcgCGCGGCGCCGg -3'
miRNA:   3'- -CGUGuCGAacUGCAUG--------------GCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 127636 0.67 0.898113
Target:  5'- cGCGCGGCggucuucaacccugcGGCGUGCCgGCgccucauccagaugGGCGCCGa -3'
miRNA:   3'- -CGUGUCGaa-------------CUGCAUGG-CG--------------UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 127390 0.66 0.931459
Target:  5'- cGCGCGcGCgacaugGACGggcgcacGCUGCuGCACCAc -3'
miRNA:   3'- -CGUGU-CGaa----CUGCa------UGGCGuCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 125982 0.66 0.941458
Target:  5'- cGCGCGGCUgcaGACc--CCGCuGCACg- -3'
miRNA:   3'- -CGUGUCGAa--CUGcauGGCGuCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 125518 0.69 0.825492
Target:  5'- cGUGCGGCUgcuCGUGCgGUacGGCGCCGa -3'
miRNA:   3'- -CGUGUCGAacuGCAUGgCG--UCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.