miRNA display CGI


Results 1 - 20 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25531 5' -54.2 NC_005337.1 + 117965 1.11 0.002366
Target:  5'- cGCACAGCUUGACGUACCGCAGCACCAg -3'
miRNA:   3'- -CGUGUCGAACUGCAUGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 14420 0.71 0.710295
Target:  5'- -uGCcGCgcGACGUGCCGCcgcuGGCGCCGg -3'
miRNA:   3'- cgUGuCGaaCUGCAUGGCG----UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 6205 0.71 0.720517
Target:  5'- gGCGCGGCgacugcaUGugGUGgUGCAGCAgCGu -3'
miRNA:   3'- -CGUGUCGa------ACugCAUgGCGUCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 109083 0.66 0.941458
Target:  5'- cGCGCGaugccGCUggaGugGUucacgcucaGCCGCGuGCACCAc -3'
miRNA:   3'- -CGUGU-----CGAa--CugCA---------UGGCGU-CGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 16095 0.74 0.553774
Target:  5'- gGCGCgAGCUcGaACGgguccGCCGCGGCGCCGu -3'
miRNA:   3'- -CGUG-UCGAaC-UGCa----UGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 65096 0.73 0.563059
Target:  5'- aGCACGcucacguGCUUGGCGaugUGCUGCAGCAgCAc -3'
miRNA:   3'- -CGUGU-------CGAACUGC---AUGGCGUCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 56456 0.73 0.616298
Target:  5'- aGCGCGGUgauggUGGCcagcgacCCGCGGCGCCAg -3'
miRNA:   3'- -CGUGUCGa----ACUGcau----GGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 89947 0.72 0.626808
Target:  5'- cGCGCGGauaaaGGCGcgGCCGCAGCACg- -3'
miRNA:   3'- -CGUGUCgaa--CUGCa-UGGCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 118792 0.72 0.647833
Target:  5'- -gGCGGCgccGuCGUGCCGCGcGCGCCGu -3'
miRNA:   3'- cgUGUCGaa-CuGCAUGGCGU-CGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 5755 0.71 0.710295
Target:  5'- gGCACGGCggcgGGCGgcaGCCGC-GCgACCAc -3'
miRNA:   3'- -CGUGUCGaa--CUGCa--UGGCGuCG-UGGU- -5'
25531 5' -54.2 NC_005337.1 + 118236 0.71 0.679248
Target:  5'- cGCGCGGCggcaGGC--GCCGCAGCGCg- -3'
miRNA:   3'- -CGUGUCGaa--CUGcaUGGCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 34885 0.72 0.637322
Target:  5'- uGCGCAGCaccggcagGugGUGCCGC-GCGuCCAc -3'
miRNA:   3'- -CGUGUCGaa------CugCAUGGCGuCGU-GGU- -5'
25531 5' -54.2 NC_005337.1 + 91874 0.8 0.26313
Target:  5'- cGCACAGCgagGccGCGcGCCGCGGCGCCu -3'
miRNA:   3'- -CGUGUCGaa-C--UGCaUGGCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 37153 0.71 0.693798
Target:  5'- cGCGCAGCUccgccaccgccgaGCGccACUGCGGCACCAg -3'
miRNA:   3'- -CGUGUCGAac-----------UGCa-UGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 46495 0.76 0.417729
Target:  5'- cGCGCGGCc-GAC--ACCGCGGCGCCGg -3'
miRNA:   3'- -CGUGUCGaaCUGcaUGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 133709 0.72 0.634168
Target:  5'- cGCGCGGCcgcGGCGUACgCGCggcgguggcggaguGGCGCCGg -3'
miRNA:   3'- -CGUGUCGaa-CUGCAUG-GCG--------------UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 127859 0.71 0.696903
Target:  5'- cGCGCuGCUguGCGUGCacagucugguggcgCGCGGCGCCGg -3'
miRNA:   3'- -CGUGuCGAacUGCAUG--------------GCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 108921 0.71 0.710295
Target:  5'- gGCAcCAGCgaGACGcGCCGCgacguGGCGCCc -3'
miRNA:   3'- -CGU-GUCGaaCUGCaUGGCG-----UCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 11213 0.76 0.435963
Target:  5'- aCGCGGCUcaUGcCGUACCGCAgguGCACCu -3'
miRNA:   3'- cGUGUCGA--ACuGCAUGGCGU---CGUGGu -5'
25531 5' -54.2 NC_005337.1 + 85903 0.73 0.563059
Target:  5'- gGCGCGGC-UGACGUucucguccaccACCGCGGCcugguucACCGg -3'
miRNA:   3'- -CGUGUCGaACUGCA-----------UGGCGUCG-------UGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.