miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 5' -60.1 NC_005337.1 + 133709 0.66 0.669949
Target:  5'- cGCGCGGCcgCGGCguacgcgCGGCgguggcggagugGCGCCGg- -3'
miRNA:   3'- aCGUGCUGuaGUCG-------GCCG------------CGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 133709 0.66 0.669949
Target:  5'- cGCGCGGCcgCGGCguacgcgCGGCgguggcggagugGCGCCGg- -3'
miRNA:   3'- aCGUGCUGuaGUCG-------GCCG------------CGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 132826 0.67 0.650874
Target:  5'- cGUACGugGUCGcGCaccuCGGCGCcGCCGc- -3'
miRNA:   3'- aCGUGCugUAGU-CG----GCCGCG-CGGCac -5'
25532 5' -60.1 NC_005337.1 + 132556 0.68 0.600566
Target:  5'- gUGguUGuCGUCGGCaCGGUG-GCCGUGu -3'
miRNA:   3'- -ACguGCuGUAGUCG-GCCGCgCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 132487 0.66 0.690904
Target:  5'- gUGCgGCGGCAggagggacuggCGGCCGGCGggaUGCCGc- -3'
miRNA:   3'- -ACG-UGCUGUa----------GUCGGCCGC---GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 132312 0.67 0.630741
Target:  5'- gUGCACGGCggCGGagGGgGCGCUGg- -3'
miRNA:   3'- -ACGUGCUGuaGUCggCCgCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 132081 0.66 0.690904
Target:  5'- cGCGCccGCGUCcGCCGcCuGCGCCGUGc -3'
miRNA:   3'- aCGUGc-UGUAGuCGGCcG-CGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 132058 0.67 0.639804
Target:  5'- gGCGCGgugguGCAUCGGCCcuucGaccagaccaccgaGCGCGUCGUGg -3'
miRNA:   3'- aCGUGC-----UGUAGUCGG----C-------------CGCGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 131903 0.67 0.630741
Target:  5'- cGCACGugGacgCGGUcgaccggugcugCGGCGCGCUGg- -3'
miRNA:   3'- aCGUGCugUa--GUCG------------GCCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 131379 0.68 0.560678
Target:  5'- cUGgACGugGUCugcAGCCGGaCGCcGCCGg- -3'
miRNA:   3'- -ACgUGCugUAG---UCGGCC-GCG-CGGCac -5'
25532 5' -60.1 NC_005337.1 + 131340 0.7 0.474236
Target:  5'- aUGCGCGccgugcGCGUCGGCacucCGGCGaCGCCGc- -3'
miRNA:   3'- -ACGUGC------UGUAGUCG----GCCGC-GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 131242 0.67 0.650874
Target:  5'- cGUACGugGUCGcGCacauCGGCGCGCaCGc- -3'
miRNA:   3'- aCGUGCugUAGU-CG----GCCGCGCG-GCac -5'
25532 5' -60.1 NC_005337.1 + 131152 0.68 0.600566
Target:  5'- cGCugGACGcgaGGCCGGC-CGCgGUc -3'
miRNA:   3'- aCGugCUGUag-UCGGCCGcGCGgCAc -5'
25532 5' -60.1 NC_005337.1 + 131081 0.66 0.67095
Target:  5'- aGCGCGAguUCguGGUCuGCGCGCUGg- -3'
miRNA:   3'- aCGUGCUguAG--UCGGcCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 130299 0.69 0.531243
Target:  5'- aGCGCuGCucaaGGCCGGUGCGUaCGUGg -3'
miRNA:   3'- aCGUGcUGuag-UCGGCCGCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 129510 0.68 0.579553
Target:  5'- cGCGCGuCAUCGacgcgcugcucgcGCgCGGCGCGagcguCCGUGa -3'
miRNA:   3'- aCGUGCuGUAGU-------------CG-GCCGCGC-----GGCAC- -5'
25532 5' -60.1 NC_005337.1 + 129000 0.7 0.446898
Target:  5'- aGUuCGACAUCAGuCCGGagucgGCGCUGUa -3'
miRNA:   3'- aCGuGCUGUAGUC-GGCCg----CGCGGCAc -5'
25532 5' -60.1 NC_005337.1 + 128794 0.67 0.660924
Target:  5'- cGCGCGAuCAUgGGCgGGUGCgGCUGc- -3'
miRNA:   3'- aCGUGCU-GUAgUCGgCCGCG-CGGCac -5'
25532 5' -60.1 NC_005337.1 + 128747 0.69 0.521553
Target:  5'- aGCGCGugAcagagcUCcGCCGGCGCGCg--- -3'
miRNA:   3'- aCGUGCugU------AGuCGGCCGCGCGgcac -5'
25532 5' -60.1 NC_005337.1 + 128703 0.73 0.296744
Target:  5'- cGCugGCGACG-CGGCUGGCGCG-CGUGu -3'
miRNA:   3'- aCG--UGCUGUaGUCGGCCGCGCgGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.