miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25534 5' -51 NC_005337.1 + 130801 0.66 0.991256
Target:  5'- aGCACGcgcAGUCGcGACGACccaguGCCGcCGugAu -3'
miRNA:   3'- -CGUGU---UCAGC-CUGUUG-----CGGCaGUugU- -5'
25534 5' -51 NC_005337.1 + 130092 0.69 0.9403
Target:  5'- cCACccGGUgaUGGAgGACGCCGUCAugGa -3'
miRNA:   3'- cGUGu-UCA--GCCUgUUGCGGCAGUugU- -5'
25534 5' -51 NC_005337.1 + 128229 0.67 0.979185
Target:  5'- cCGCGGGcgCGGACAuccACGCcCG-CGACAa -3'
miRNA:   3'- cGUGUUCa-GCCUGU---UGCG-GCaGUUGU- -5'
25534 5' -51 NC_005337.1 + 128143 0.66 0.99239
Target:  5'- cGCGCGAaacgcgcUCGGACGcACGCCG-CuGCAc -3'
miRNA:   3'- -CGUGUUc------AGCCUGU-UGCGGCaGuUGU- -5'
25534 5' -51 NC_005337.1 + 128025 0.7 0.912798
Target:  5'- cGCGCAgacgAGUCGGcCAAgGCCGU--GCAc -3'
miRNA:   3'- -CGUGU----UCAGCCuGUUgCGGCAguUGU- -5'
25534 5' -51 NC_005337.1 + 127978 0.69 0.94951
Target:  5'- uGCGCGAGgugCGcuGCAACGCCGacaCGACGc -3'
miRNA:   3'- -CGUGUUCa--GCc-UGUUGCGGCa--GUUGU- -5'
25534 5' -51 NC_005337.1 + 127792 0.7 0.912798
Target:  5'- gGUGCGGGUgcUGGugGACGCCGgcgcugacgUCAACGu -3'
miRNA:   3'- -CGUGUUCA--GCCugUUGCGGC---------AGUUGU- -5'
25534 5' -51 NC_005337.1 + 127576 0.7 0.930071
Target:  5'- uGCugGAGgCGGGCGcaGCCGUgGACGu -3'
miRNA:   3'- -CGugUUCaGCCUGUugCGGCAgUUGU- -5'
25534 5' -51 NC_005337.1 + 127262 0.66 0.991256
Target:  5'- uGCugGAGgcgggcgCGGACGuccGCGCCaUgGACAa -3'
miRNA:   3'- -CGugUUCa------GCCUGU---UGCGGcAgUUGU- -5'
25534 5' -51 NC_005337.1 + 125948 0.66 0.99239
Target:  5'- uGCuCGAGgCGGGCGugGgCGUgAACGc -3'
miRNA:   3'- -CGuGUUCaGCCUGUugCgGCAgUUGU- -5'
25534 5' -51 NC_005337.1 + 124413 0.69 0.94951
Target:  5'- uGCGCGagauGGUCcuGGGCAACGCCG-CGcGCGg -3'
miRNA:   3'- -CGUGU----UCAG--CCUGUUGCGGCaGU-UGU- -5'
25534 5' -51 NC_005337.1 + 122950 0.67 0.983465
Target:  5'- ----cGGcCGcGACGACGCCGcCAACAa -3'
miRNA:   3'- cguguUCaGC-CUGUUGCGGCaGUUGU- -5'
25534 5' -51 NC_005337.1 + 122237 0.66 0.988593
Target:  5'- cGC-CAAGUCGGGCGugaACGugaCCGUCcuCGu -3'
miRNA:   3'- -CGuGUUCAGCCUGU---UGC---GGCAGuuGU- -5'
25534 5' -51 NC_005337.1 + 122228 0.67 0.983465
Target:  5'- cGCGCAcGcCGGACGaccgcACGCCGaugacCGGCAu -3'
miRNA:   3'- -CGUGUuCaGCCUGU-----UGCGGCa----GUUGU- -5'
25534 5' -51 NC_005337.1 + 121819 0.67 0.97676
Target:  5'- -gACGAGuUCGGuAUGACGCCGgcCGACGu -3'
miRNA:   3'- cgUGUUC-AGCC-UGUUGCGGCa-GUUGU- -5'
25534 5' -51 NC_005337.1 + 121710 0.74 0.755719
Target:  5'- cGCGCGGGgaggCGGACAagACGCCG-CuGCAc -3'
miRNA:   3'- -CGUGUUCa---GCCUGU--UGCGGCaGuUGU- -5'
25534 5' -51 NC_005337.1 + 119856 0.66 0.988593
Target:  5'- cGCACGuGUCuccuGGCGGCGCgGUuCAGCGc -3'
miRNA:   3'- -CGUGUuCAGc---CUGUUGCGgCA-GUUGU- -5'
25534 5' -51 NC_005337.1 + 119729 0.67 0.985337
Target:  5'- cGCACGAGgaacucgCGGACAugGUgCGcCAgaGCAc -3'
miRNA:   3'- -CGUGUUCa------GCCUGUugCG-GCaGU--UGU- -5'
25534 5' -51 NC_005337.1 + 119625 0.67 0.979185
Target:  5'- cGCGCugauGcCGGAgGACGCCucggugcgcuucGUCAACGc -3'
miRNA:   3'- -CGUGuu--CaGCCUgUUGCGG------------CAGUUGU- -5'
25534 5' -51 NC_005337.1 + 118766 0.69 0.953738
Target:  5'- uGCGCGAcGUCcuaGAUGACGCCGgCGGCGg -3'
miRNA:   3'- -CGUGUU-CAGc--CUGUUGCGGCaGUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.