miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 5' -57.9 NC_005337.1 + 133736 0.7 0.621321
Target:  5'- uGGCGgaguggcGCCGGCAgcuggagcgcCUGCGCCgcGAGGAg- -3'
miRNA:   3'- -CCGCa------UGGCCGU----------GAUGCGG--CUCCUga -5'
25536 5' -57.9 NC_005337.1 + 133736 0.7 0.621321
Target:  5'- uGGCGgaguggcGCCGGCAgcuggagcgcCUGCGCCgcGAGGAg- -3'
miRNA:   3'- -CCGCa------UGGCCGU----------GAUGCGG--CUCCUga -5'
25536 5' -57.9 NC_005337.1 + 133177 0.69 0.64153
Target:  5'- cGGCGg--CGGCGCUGCGCCGGc---- -3'
miRNA:   3'- -CCGCaugGCCGUGAUGCGGCUccuga -5'
25536 5' -57.9 NC_005337.1 + 133177 0.69 0.64153
Target:  5'- cGGCGg--CGGCGCUGCGCCGGc---- -3'
miRNA:   3'- -CCGCaugGCCGUGAUGCGGCUccuga -5'
25536 5' -57.9 NC_005337.1 + 132763 0.75 0.346837
Target:  5'- uGGCGgacgcGCUGGCGC-GCGCCGAGGugACg -3'
miRNA:   3'- -CCGCa----UGGCCGUGaUGCGGCUCC--UGa -5'
25536 5' -57.9 NC_005337.1 + 132308 0.7 0.591084
Target:  5'- cGGCGUGCaCGGCG--GCGgaGGGGGCg -3'
miRNA:   3'- -CCGCAUG-GCCGUgaUGCggCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 132185 0.67 0.769208
Target:  5'- aGGC--GCUGGCGCUgGCGUCGAGcGCg -3'
miRNA:   3'- -CCGcaUGGCCGUGA-UGCGGCUCcUGa -5'
25536 5' -57.9 NC_005337.1 + 131842 0.66 0.81402
Target:  5'- -aCGUACCuGCACUACGacggccccgaccCCGAGGuCg -3'
miRNA:   3'- ccGCAUGGcCGUGAUGC------------GGCUCCuGa -5'
25536 5' -57.9 NC_005337.1 + 131795 0.67 0.78755
Target:  5'- cGCGUACCcgaaCAUagcCGCCGAGGACc -3'
miRNA:   3'- cCGCAUGGcc--GUGau-GCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 131630 0.66 0.822532
Target:  5'- aGGCG-GCCGGCGCcaccuucCGCuuCGAGGAg- -3'
miRNA:   3'- -CCGCaUGGCCGUGau-----GCG--GCUCCUga -5'
25536 5' -57.9 NC_005337.1 + 131352 0.66 0.830876
Target:  5'- cGCGU--CGGCACUccggcgACGCCGcuccuGGACg -3'
miRNA:   3'- cCGCAugGCCGUGA------UGCGGCu----CCUGa -5'
25536 5' -57.9 NC_005337.1 + 130667 0.75 0.317236
Target:  5'- gGGaCGUcuaCGGCGCUACGCCGcugGGGGCg -3'
miRNA:   3'- -CC-GCAug-GCCGUGAUGCGGC---UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 130168 0.66 0.839043
Target:  5'- cGCGUcuCCGcGCGC-GCGgUGAGGACg -3'
miRNA:   3'- cCGCAu-GGC-CGUGaUGCgGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 129058 0.67 0.769208
Target:  5'- cGCGUGugUCGgagagguggucGCGCUGCugGCCGAGGGCg -3'
miRNA:   3'- cCGCAU--GGC-----------CGUGAUG--CGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 127658 0.78 0.237721
Target:  5'- cGGCGUGCCGGCGCcucauccagauggGCGCCGAccuGGCg -3'
miRNA:   3'- -CCGCAUGGCCGUGa------------UGCGGCUc--CUGa -5'
25536 5' -57.9 NC_005337.1 + 127560 0.68 0.688794
Target:  5'- cGCGUuguCCGGCuGCUGCuggaggcgggcgcaGCCGuGGACg -3'
miRNA:   3'- cCGCAu--GGCCG-UGAUG--------------CGGCuCCUGa -5'
25536 5' -57.9 NC_005337.1 + 127370 0.66 0.81402
Target:  5'- uGCGcGCCGGCGCggacccgcgcGCGCgCGAcauGGACg -3'
miRNA:   3'- cCGCaUGGCCGUGa---------UGCG-GCU---CCUGa -5'
25536 5' -57.9 NC_005337.1 + 126445 0.72 0.512184
Target:  5'- cGCGUguaccACCGcGCGCUGuCGCgGAGGAUg -3'
miRNA:   3'- cCGCA-----UGGC-CGUGAU-GCGgCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 125572 0.72 0.502603
Target:  5'- aGCGUGCUGGCcagguacaucuACgACGCCGAGG-Cg -3'
miRNA:   3'- cCGCAUGGCCG-----------UGaUGCGGCUCCuGa -5'
25536 5' -57.9 NC_005337.1 + 123868 0.67 0.793845
Target:  5'- cGGCGgGCgCGGCGCgUACGgCCucgucuucauuccgGAGGGCg -3'
miRNA:   3'- -CCGCaUG-GCCGUG-AUGC-GG--------------CUCCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.