miRNA display CGI


Results 1 - 20 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 5' -58.2 NC_005337.1 + 133078 0.7 0.556078
Target:  5'- gCGCcgGugGCCGCCUGgauGCAGGagauccgUGCGCUc -3'
miRNA:   3'- -GCG--UugCGGCGGACg--UGUCU-------ACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 132739 0.72 0.44153
Target:  5'- aGCGGuCGCCGCCcGCACacgaaguggcGGAcGCGCUg -3'
miRNA:   3'- gCGUU-GCGGCGGaCGUG----------UCUaCGCGA- -5'
25539 5' -58.2 NC_005337.1 + 132086 0.8 0.134334
Target:  5'- cCGCGucCGCCGCCUGCGCc-GUGCGCg -3'
miRNA:   3'- -GCGUu-GCGGCGGACGUGucUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 131190 0.7 0.547042
Target:  5'- uCGCuggcCGUCGCCgaggUGCGCGGAguccGCGCUa -3'
miRNA:   3'- -GCGuu--GCGGCGG----ACGUGUCUa---CGCGA- -5'
25539 5' -58.2 NC_005337.1 + 131162 0.68 0.628473
Target:  5'- uGCAcACGCUG-CUGCuGCuGAUGCGCg -3'
miRNA:   3'- gCGU-UGCGGCgGACG-UGuCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 130887 0.66 0.75909
Target:  5'- gGCAacACGCCG-CUGCACcucauGGccGCGCa -3'
miRNA:   3'- gCGU--UGCGGCgGACGUG-----UCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 130777 0.73 0.388193
Target:  5'- gCGCAgaccuggGCGCCGCCgGUGCGGcugcUGCGCUu -3'
miRNA:   3'- -GCGU-------UGCGGCGGaCGUGUCu---ACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 130644 0.69 0.5875
Target:  5'- cCGCGGCGCUGgacGCACAGGUGCcCUg -3'
miRNA:   3'- -GCGUUGCGGCggaCGUGUCUACGcGA- -5'
25539 5' -58.2 NC_005337.1 + 129473 0.68 0.628473
Target:  5'- cCGCugcACGCCuGCCU-CACGGggGCGUg -3'
miRNA:   3'- -GCGu--UGCGG-CGGAcGUGUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 128763 0.69 0.567179
Target:  5'- cCGcCGGCGCgCGaaCCUgguaGCACGGGUGCGCg -3'
miRNA:   3'- -GC-GUUGCG-GC--GGA----CGUGUCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 128528 0.68 0.659258
Target:  5'- cCGCc-CGCCGCCgUGC-CAGAgcccgaGCGCg -3'
miRNA:   3'- -GCGuuGCGGCGG-ACGuGUCUa-----CGCGa -5'
25539 5' -58.2 NC_005337.1 + 128299 0.71 0.459902
Target:  5'- gCGCGccugGCGCCGUCUGCucGCGcGcgGCGCg -3'
miRNA:   3'- -GCGU----UGCGGCGGACG--UGU-CuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 128100 0.67 0.729905
Target:  5'- gGCAACGCgCucuucggcaagGUCUGCAU-GAUGCGCc -3'
miRNA:   3'- gCGUUGCG-G-----------CGGACGUGuCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 128036 0.66 0.75909
Target:  5'- aGCGACGCUGaCUcGCGCGGGgacaCGCUg -3'
miRNA:   3'- gCGUUGCGGC-GGaCGUGUCUac--GCGA- -5'
25539 5' -58.2 NC_005337.1 + 127956 0.71 0.478673
Target:  5'- uGCGAgGCggagauccgCGCCaUGCGCgAGGUGCGCUg -3'
miRNA:   3'- gCGUUgCG---------GCGG-ACGUG-UCUACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 127856 0.69 0.60795
Target:  5'- gGCcGCGCUGCUgugcgUGCACAGucuggugGCGCg -3'
miRNA:   3'- gCGuUGCGGCGG-----ACGUGUCua-----CGCGa -5'
25539 5' -58.2 NC_005337.1 + 127367 0.67 0.739731
Target:  5'- uGCuGCG-CGCCgGCGCGGAcccGCGCg -3'
miRNA:   3'- gCGuUGCgGCGGaCGUGUCUa--CGCGa -5'
25539 5' -58.2 NC_005337.1 + 126411 0.68 0.679685
Target:  5'- gGcCAAgGCCGCCcgGCGCGcGAcgGCGCg -3'
miRNA:   3'- gC-GUUgCGGCGGa-CGUGU-CUa-CGCGa -5'
25539 5' -58.2 NC_005337.1 + 126268 0.7 0.511411
Target:  5'- aGCGACGCCGCgauagccacgcacGCGCAGAuaaucgcccugUGCGCg -3'
miRNA:   3'- gCGUUGCGGCGga-----------CGUGUCU-----------ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 126062 0.66 0.75909
Target:  5'- aCGCGACccuuGCCGaCCUGgACgAGGUGaCGCc -3'
miRNA:   3'- -GCGUUG----CGGC-GGACgUG-UCUAC-GCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.