miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 5' -58.2 NC_005337.1 + 113966 1.07 0.001903
Target:  5'- gCGCAACGCCGCCUGCACAGAUGCGCUc -3'
miRNA:   3'- -GCGUUGCGGCGGACGUGUCUACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 38801 0.7 0.507509
Target:  5'- uGCAugGaCUGgCUGCGCAcGggGCGCUa -3'
miRNA:   3'- gCGUugC-GGCgGACGUGU-CuaCGCGA- -5'
25539 5' -58.2 NC_005337.1 + 82359 0.7 0.517286
Target:  5'- aGCGugGCCGCCgacUGCACg---GCGCc -3'
miRNA:   3'- gCGUugCGGCGG---ACGUGucuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 49086 0.66 0.787257
Target:  5'- -cCAACGCCuCCaucGCGCAGcucGUGCGCg -3'
miRNA:   3'- gcGUUGCGGcGGa--CGUGUC---UACGCGa -5'
25539 5' -58.2 NC_005337.1 + 87946 0.74 0.311124
Target:  5'- gGCGGCaGCCcggaccuccugcGCCUGCACGGG-GCGCUg -3'
miRNA:   3'- gCGUUG-CGG------------CGGACGUGUCUaCGCGA- -5'
25539 5' -58.2 NC_005337.1 + 33578 0.73 0.380688
Target:  5'- gCGCGGCGCCGCgUcGCGuCGGccGCGCg -3'
miRNA:   3'- -GCGUUGCGGCGgA-CGU-GUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 105052 0.73 0.389032
Target:  5'- gGCGACGCCcgGCC-GCGCGGcgcUGCGCa -3'
miRNA:   3'- gCGUUGCGG--CGGaCGUGUCu--ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 25088 0.72 0.422695
Target:  5'- gCGCGACGCCgagcuccGCCcGCGCGGcgcgGCGCg -3'
miRNA:   3'- -GCGUUGCGG-------CGGaCGUGUCua--CGCGa -5'
25539 5' -58.2 NC_005337.1 + 132739 0.72 0.44153
Target:  5'- aGCGGuCGCCGCCcGCACacgaaguggcGGAcGCGCUg -3'
miRNA:   3'- gCGUU-GCGGCGGaCGUG----------UCUaCGCGA- -5'
25539 5' -58.2 NC_005337.1 + 108549 0.71 0.497812
Target:  5'- gCGgGGCGCgCGCCUGaCGCuGGcgGCGCg -3'
miRNA:   3'- -GCgUUGCG-GCGGAC-GUG-UCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 127956 0.71 0.478673
Target:  5'- uGCGAgGCggagauccgCGCCaUGCGCgAGGUGCGCUg -3'
miRNA:   3'- gCGUUgCG---------GCGG-ACGUG-UCUACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 62949 0.72 0.44153
Target:  5'- uGCAcCGCCGCC-GCGCGGGU-CGCc -3'
miRNA:   3'- gCGUuGCGGCGGaCGUGUCUAcGCGa -5'
25539 5' -58.2 NC_005337.1 + 124430 0.78 0.196901
Target:  5'- gGCAACGCCGC--GCGCGGGUGCGg- -3'
miRNA:   3'- gCGUUGCGGCGgaCGUGUCUACGCga -5'
25539 5' -58.2 NC_005337.1 + 70039 0.71 0.478673
Target:  5'- cCGCAGCGCCGCaaagaggcgCUGCccgucGCGGAccgcgaacucgUGCGCg -3'
miRNA:   3'- -GCGUUGCGGCG---------GACG-----UGUCU-----------ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 8149 0.76 0.234022
Target:  5'- gGCAugGCCGCgC-GCACGGcGUGCGCg -3'
miRNA:   3'- gCGUugCGGCG-GaCGUGUC-UACGCGa -5'
25539 5' -58.2 NC_005337.1 + 1105 0.72 0.432501
Target:  5'- gCGCAGCGCCGCC-GCcgggagcagccGCAGcacGCGCg -3'
miRNA:   3'- -GCGUUGCGGCGGaCG-----------UGUCua-CGCGa -5'
25539 5' -58.2 NC_005337.1 + 30942 0.71 0.497812
Target:  5'- aGCAGCgggcgggugaGCCGCCcgGCGCcgaaguuGAUGCGCa -3'
miRNA:   3'- gCGUUG----------CGGCGGa-CGUGu------CUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 70358 0.7 0.507509
Target:  5'- gCGguGCGCCGCC-GCACGuGGUcGCGUc -3'
miRNA:   3'- -GCguUGCGGCGGaCGUGU-CUA-CGCGa -5'
25539 5' -58.2 NC_005337.1 + 17041 0.75 0.304019
Target:  5'- uCGCGuuccGCGCgGUCUGCACguuccgcuGGAUGCGCa -3'
miRNA:   3'- -GCGU----UGCGgCGGACGUG--------UCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 108597 0.73 0.380688
Target:  5'- gCGCGACGCCGCCUucgaGgGCcGcgGCGCc -3'
miRNA:   3'- -GCGUUGCGGCGGA----CgUGuCuaCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.