Results 1 - 20 of 251 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25540 | 5' | -53.5 | NC_005337.1 | + | 132389 | 0.65 | 0.967405 |
Target: 5'- gAGGCCGcCGAGugcgcauagcgcugGuGAAcagcGGACacGCGGCCa -3' miRNA: 3'- -UCCGGCuGCUU--------------UuCUU----CCUG--UGCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 47870 | 0.66 | 0.966447 |
Target: 5'- cGGGCgCGGCGGAcgcAGAcuucugcgcgcaguGGuaaACGCGGCCg -3' miRNA: 3'- -UCCG-GCUGCUUu--UCUu-------------CC---UGUGCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 122451 | 0.66 | 0.966447 |
Target: 5'- -cGCCGacuucaucgcgcaguGCGAGGcaGAGGugGCGGUCa -3' miRNA: 3'- ucCGGC---------------UGCUUUucUUCCugUGCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 71843 | 0.66 | 0.965138 |
Target: 5'- cGGCC-ACGAuGAGAGGuGCcCGGCa -3' miRNA: 3'- uCCGGcUGCUuUUCUUCcUGuGCCGg -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 56925 | 0.66 | 0.965138 |
Target: 5'- -aGCCGGCuccGAGcgcGGAgGCGGCCa -3' miRNA: 3'- ucCGGCUGcuuUUCuu-CCUgUGCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 108571 | 0.66 | 0.965138 |
Target: 5'- aAGGCUGACGAGucgcuccuccAcacuuucgcuGGAGGGAgCAcCGGCg -3' miRNA: 3'- -UCCGGCUGCUU----------U----------UCUUCCU-GU-GCCGg -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 78735 | 0.66 | 0.965138 |
Target: 5'- cGGUgGACGAGAugacguugugucGGugcagcGAGGGCugcCGGCCg -3' miRNA: 3'- uCCGgCUGCUUU------------UC------UUCCUGu--GCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 119814 | 0.66 | 0.965138 |
Target: 5'- aGGGUgGugGAGAu---GGACAUugagGGCCu -3' miRNA: 3'- -UCCGgCugCUUUucuuCCUGUG----CCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 64093 | 0.66 | 0.963794 |
Target: 5'- cAGGuuGACGAugucguuGACgACGGCCu -3' miRNA: 3'- -UCCggCUGCUuuucuucCUG-UGCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 84001 | 0.66 | 0.961711 |
Target: 5'- uGGCgGACGAGGAGGcgGGGuGCugGaucgagcuguccGCCa -3' miRNA: 3'- uCCGgCUGCUUUUCU--UCC-UGugC------------CGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 49592 | 0.66 | 0.961711 |
Target: 5'- uGGGaUCGGCGAccaguGGGAGGcgccCGCGGCa -3' miRNA: 3'- -UCC-GGCUGCUuu---UCUUCCu---GUGCCGg -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 40548 | 0.66 | 0.961711 |
Target: 5'- -cGCCGGCGGGucgcuGGAGGcCGCGucgaGCCg -3' miRNA: 3'- ucCGGCUGCUUuu---CUUCCuGUGC----CGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 83970 | 0.66 | 0.961711 |
Target: 5'- aGGGCagCGGCGGcgcGGgcGGGCACgucugGGCCu -3' miRNA: 3'- -UCCG--GCUGCUuu-UCuuCCUGUG-----CCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 38485 | 0.66 | 0.961711 |
Target: 5'- cGGCCGcuuccuCucGAAGGAGGugGCcGCCc -3' miRNA: 3'- uCCGGCu-----GcuUUUCUUCCugUGcCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 84892 | 0.66 | 0.961711 |
Target: 5'- cGGCCG-CGggGGGcGGuGCGgCGGUCg -3' miRNA: 3'- uCCGGCuGCuuUUCuUCcUGU-GCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 85589 | 0.66 | 0.961711 |
Target: 5'- -uGCCGA-GAGGucguuGAAGGugcugcuCACGGCCu -3' miRNA: 3'- ucCGGCUgCUUUu----CUUCCu------GUGCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 45190 | 0.66 | 0.960638 |
Target: 5'- uGGCCGugccCGGGgcgcugucgcucauGAGucucgcggcGGACGCGGCCu -3' miRNA: 3'- uCCGGCu---GCUU--------------UUCuu-------CCUGUGCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 120618 | 0.66 | 0.959546 |
Target: 5'- gAGGCCGGC---AAGAcGGGCGucacgaucgaggaggUGGCCc -3' miRNA: 3'- -UCCGGCUGcuuUUCUuCCUGU---------------GCCGG- -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 52652 | 0.66 | 0.958056 |
Target: 5'- -uGCUGACcauGGAGGAGGcCAUGGCg -3' miRNA: 3'- ucCGGCUGcu-UUUCUUCCuGUGCCGg -5' |
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25540 | 5' | -53.5 | NC_005337.1 | + | 42806 | 0.66 | 0.958056 |
Target: 5'- uGG-CGGCGcacGAGAGccGGAUaACGGCCa -3' miRNA: 3'- uCCgGCUGC---UUUUCuuCCUG-UGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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