miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 5' -61.4 NC_005337.1 + 103990 0.66 0.662258
Target:  5'- -cGGCCGUC-CUGGCgcucACCUgcgcgCCGuGGAc -3'
miRNA:   3'- gaCCGGUAGcGGCCG----UGGAa----GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 93606 0.66 0.662258
Target:  5'- --cGCCGUCGCCgcgccuagagGGCGCCccacugcgUCGGGAc -3'
miRNA:   3'- gacCGGUAGCGG----------CCGUGGaa------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 35748 0.66 0.662258
Target:  5'- -cGGCCGUCggGCgGGCuccccccgGCCUUgCCGcGGAa -3'
miRNA:   3'- gaCCGGUAG--CGgCCG--------UGGAA-GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 81237 0.66 0.662258
Target:  5'- -aGGCCGUugCGCCGGCAgCUcCCGc-- -3'
miRNA:   3'- gaCCGGUA--GCGGCCGUgGAaGGCccu -5'
25573 5' -61.4 NC_005337.1 + 40120 0.66 0.652328
Target:  5'- -cGGuucuCCGUCGUggggaGGCGCCgccCCGGGAa -3'
miRNA:   3'- gaCC----GGUAGCGg----CCGUGGaa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 15248 0.66 0.652328
Target:  5'- cCUGGCgG-CGCCGGCGCCgaacgUUgUGGcGAc -3'
miRNA:   3'- -GACCGgUaGCGGCCGUGG-----AAgGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 74365 0.66 0.652328
Target:  5'- gCUGGgCAgcaCGCgGGU--CUUCCGGGAc -3'
miRNA:   3'- -GACCgGUa--GCGgCCGugGAAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 127685 0.66 0.652328
Target:  5'- gCUGaCCGUCgGCCGGCucguCCaUCCGGa- -3'
miRNA:   3'- -GACcGGUAG-CGGCCGu---GGaAGGCCcu -5'
25573 5' -61.4 NC_005337.1 + 128147 0.66 0.649346
Target:  5'- cCUGGCCgagcauGUCGCCGGgCugCUgugUCCGugcgcacugccgccGGAg -3'
miRNA:   3'- -GACCGG------UAGCGGCC-GugGA---AGGC--------------CCU- -5'
25573 5' -61.4 NC_005337.1 + 131399 0.66 0.642384
Target:  5'- -gGGCCGUgaucguguuccCGCUGGCGCgCggcUCCGcGGAc -3'
miRNA:   3'- gaCCGGUA-----------GCGGCCGUG-Ga--AGGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 23138 0.66 0.642384
Target:  5'- -cGGCCAUgCGCCccuuCC-UCCGGGAg -3'
miRNA:   3'- gaCCGGUA-GCGGccguGGaAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 97214 0.66 0.641388
Target:  5'- gUGGCCAUCguggucaGCCGGCACUUcgCCa--- -3'
miRNA:   3'- gACCGGUAG-------CGGCCGUGGAa-GGcccu -5'
25573 5' -61.4 NC_005337.1 + 72382 0.66 0.632431
Target:  5'- -cGGCCGUCG-CGGUcagcgaGCCc-CCGGGGu -3'
miRNA:   3'- gaCCGGUAGCgGCCG------UGGaaGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 15779 0.66 0.632431
Target:  5'- -cGGUCAccCGCaCGGuCACCg-CCGGGAa -3'
miRNA:   3'- gaCCGGUa-GCG-GCC-GUGGaaGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 11279 0.66 0.632431
Target:  5'- -cGGCCcUCGCCcaCGCCcaugUUCCGGGu -3'
miRNA:   3'- gaCCGGuAGCGGccGUGG----AAGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 29938 0.66 0.622478
Target:  5'- --uGCCAcaaggUUGUCGGCACCga-CGGGAc -3'
miRNA:   3'- gacCGGU-----AGCGGCCGUGGaagGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 82596 0.66 0.622478
Target:  5'- aCUGGCC-UCGCCGuaGgCgUCCaGGGGc -3'
miRNA:   3'- -GACCGGuAGCGGCcgUgGaAGG-CCCU- -5'
25573 5' -61.4 NC_005337.1 + 122345 0.66 0.622478
Target:  5'- -cGGCCGggacgaCGUCGGCaACCUgCUGGGc -3'
miRNA:   3'- gaCCGGUa-----GCGGCCG-UGGAaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 93278 0.66 0.612532
Target:  5'- -aGGCCGggggugCGUCGGCGCCUggUGGcGGu -3'
miRNA:   3'- gaCCGGUa-----GCGGCCGUGGAagGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 87900 0.66 0.612532
Target:  5'- cCUGGCUgacgCGCUGGCgcGCCUgcgCCGGc- -3'
miRNA:   3'- -GACCGGua--GCGGCCG--UGGAa--GGCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.