miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 3' -58.6 NC_005337.1 + 35047 0.66 0.818769
Target:  5'- cGCguggUGGAccGCGUCGAa-GUCCGCGCGc -3'
miRNA:   3'- -CGa---GCUUa-CGCAGCUcgCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 66084 0.66 0.818769
Target:  5'- gGCcgCGGcgGCGgaggCGcugugcGGCGUCUGCGCGc -3'
miRNA:   3'- -CGa-GCUuaCGCa---GC------UCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 133551 0.66 0.818769
Target:  5'- uCUCGcccGCGUaccccgcggccgCGGGCGUgCGCGCGa -3'
miRNA:   3'- cGAGCuuaCGCA------------GCUCGCGgGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 68317 0.66 0.818769
Target:  5'- uGCcCGAGgaggGCGgcacgCGcGUGCCCGUGCc -3'
miRNA:   3'- -CGaGCUUa---CGCa----GCuCGCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 133551 0.66 0.818769
Target:  5'- uCUCGcccGCGUaccccgcggccgCGGGCGUgCGCGCGa -3'
miRNA:   3'- cGAGCuuaCGCA------------GCUCGCGgGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 61161 0.66 0.818769
Target:  5'- aGCaCGAcgGUGUCGAaguccuccuugGUGCacaCGCGCGu -3'
miRNA:   3'- -CGaGCUuaCGCAGCU-----------CGCGg--GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 109226 0.66 0.818769
Target:  5'- uGCguaCGucUGCGagGAGgGCCCGUgGCGa -3'
miRNA:   3'- -CGa--GCuuACGCagCUCgCGGGCG-CGC- -5'
25579 3' -58.6 NC_005337.1 + 23249 0.66 0.818769
Target:  5'- uCUCGGugaccaaGCGcaagaUCGAGCGCUaCGCGCa -3'
miRNA:   3'- cGAGCUua-----CGC-----AGCUCGCGG-GCGCGc -5'
25579 3' -58.6 NC_005337.1 + 23308 0.66 0.818769
Target:  5'- cGCaCGA---CGUCGAcGCGgCCGCGCa -3'
miRNA:   3'- -CGaGCUuacGCAGCU-CGCgGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 24446 0.66 0.813669
Target:  5'- cGUUCGucccguacGCGUgccugcaaaucaucaCGAGuCGCCUGCGCGu -3'
miRNA:   3'- -CGAGCuua-----CGCA---------------GCUC-GCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 132916 0.66 0.813669
Target:  5'- cGCUCaGAUGaCG-CGAGCGCggaguucaacuaccgCCGcCGCGg -3'
miRNA:   3'- -CGAGcUUAC-GCaGCUCGCG---------------GGC-GCGC- -5'
25579 3' -58.6 NC_005337.1 + 89051 0.66 0.812814
Target:  5'- aGCUCGAAggccGCGUCcgccgcgagacucauGAGCGacagcgcCCCGgGCa -3'
miRNA:   3'- -CGAGCUUa---CGCAG---------------CUCGC-------GGGCgCGc -5'
25579 3' -58.6 NC_005337.1 + 19601 0.66 0.810238
Target:  5'- uGCguccagCGGAgagGCGgccUCGAG-GCCCGCGUu -3'
miRNA:   3'- -CGa-----GCUUa--CGC---AGCUCgCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 129288 0.66 0.810238
Target:  5'- uGCUCGAGgcaaugcugGUGUgGGGCGCgCGCuccgGCa -3'
miRNA:   3'- -CGAGCUUa--------CGCAgCUCGCGgGCG----CGc -5'
25579 3' -58.6 NC_005337.1 + 113113 0.66 0.810238
Target:  5'- cGCgcgaCGAAcgGCGUCGAGCaGgaCGCGCu -3'
miRNA:   3'- -CGa---GCUUa-CGCAGCUCG-CggGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 60753 0.66 0.810238
Target:  5'- aCUCGAGUGCcgccucgCGGGUGCCCaGCa-- -3'
miRNA:   3'- cGAGCUUACGca-----GCUCGCGGG-CGcgc -5'
25579 3' -58.6 NC_005337.1 + 126887 0.66 0.810238
Target:  5'- uGCUCGug-GCGagGAaCGCCaacuGCGCGg -3'
miRNA:   3'- -CGAGCuuaCGCagCUcGCGGg---CGCGC- -5'
25579 3' -58.6 NC_005337.1 + 85582 0.66 0.809376
Target:  5'- aGUUCGAGc-CGUUG-GCGCCCcggaucuGCGCGa -3'
miRNA:   3'- -CGAGCUUacGCAGCuCGCGGG-------CGCGC- -5'
25579 3' -58.6 NC_005337.1 + 73430 0.66 0.809376
Target:  5'- uGCUCGGGga-GaUCGuGCGCCaguucuuCGCGCGg -3'
miRNA:   3'- -CGAGCUUacgC-AGCuCGCGG-------GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 75828 0.66 0.809376
Target:  5'- cGCUCGugcacUGCGUCgcggcauaaacagGAGCgGCgCCGcCGCGa -3'
miRNA:   3'- -CGAGCuu---ACGCAG-------------CUCG-CG-GGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.