miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 3' -56 NC_005337.1 + 115360 0.66 0.900694
Target:  5'- gCGUGCccGCgGACGUGGUGgggaGCA--CGCAc -3'
miRNA:   3'- -GCACG--UG-CUGCACCACa---CGUagGCGU- -5'
25661 3' -56 NC_005337.1 + 109470 0.66 0.900694
Target:  5'- gCGUGCGCG-CGUGG-GcGCGcuUCCGgAu -3'
miRNA:   3'- -GCACGUGCuGCACCaCaCGU--AGGCgU- -5'
25661 3' -56 NC_005337.1 + 10092 0.66 0.896799
Target:  5'- ----gACGACGUGGUG-GCGuaggaguacucgcucUCCGCGu -3'
miRNA:   3'- gcacgUGCUGCACCACaCGU---------------AGGCGU- -5'
25661 3' -56 NC_005337.1 + 36137 0.66 0.894156
Target:  5'- uCGUGCGCGGCGUgcgGGUccaUGCucaccCCGCu -3'
miRNA:   3'- -GCACGUGCUGCA---CCAc--ACGua---GGCGu -5'
25661 3' -56 NC_005337.1 + 110891 0.66 0.887386
Target:  5'- -uUGUA-GAUGUaGGUGUgucGCAUCCGCGg -3'
miRNA:   3'- gcACGUgCUGCA-CCACA---CGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 57246 0.66 0.887386
Target:  5'- cCGUGCAcCGGCGcUGGUucggGCAcggggCCGCGc -3'
miRNA:   3'- -GCACGU-GCUGC-ACCAca--CGUa----GGCGU- -5'
25661 3' -56 NC_005337.1 + 28958 0.66 0.887386
Target:  5'- aCGUGCugGGCaacUGGg--GCGUgCGCAg -3'
miRNA:   3'- -GCACGugCUGc--ACCacaCGUAgGCGU- -5'
25661 3' -56 NC_005337.1 + 14812 0.66 0.887386
Target:  5'- uCGUGCgugagcgaggACGcCGUGGUGgGCGUCCu-- -3'
miRNA:   3'- -GCACG----------UGCuGCACCACaCGUAGGcgu -5'
25661 3' -56 NC_005337.1 + 42841 0.66 0.880388
Target:  5'- cCGcUGCGCGugGUGGUGacgGaCGcCUGCGu -3'
miRNA:   3'- -GC-ACGUGCugCACCACa--C-GUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 68499 0.66 0.880388
Target:  5'- gCGcUGCugGCGGcCGUGG-GUGCGcCCGCGc -3'
miRNA:   3'- -GC-ACG--UGCU-GCACCaCACGUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 72606 0.66 0.880388
Target:  5'- uCGcGCGCgGGCGUGGUgGUGC--CCGCc -3'
miRNA:   3'- -GCaCGUG-CUGCACCA-CACGuaGGCGu -5'
25661 3' -56 NC_005337.1 + 50002 0.66 0.880388
Target:  5'- gGUGCACGACGgaacGGUGaccaCGUCgaCGCAc -3'
miRNA:   3'- gCACGUGCUGCa---CCACac--GUAG--GCGU- -5'
25661 3' -56 NC_005337.1 + 1451 0.66 0.873166
Target:  5'- uCGUGCACGugaACGUcgcGGauccguUG-GCGUCCGCGc -3'
miRNA:   3'- -GCACGUGC---UGCA---CC------ACaCGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 77471 0.66 0.873166
Target:  5'- gCGUGCGCGGCGacgcgucccgGGgcgGUGCAUggCgGCGa -3'
miRNA:   3'- -GCACGUGCUGCa---------CCa--CACGUA--GgCGU- -5'
25661 3' -56 NC_005337.1 + 56094 0.67 0.858072
Target:  5'- --aGCGCGACGUGGagaagGUGCucgaggCGCAc -3'
miRNA:   3'- gcaCGUGCUGCACCa----CACGuag---GCGU- -5'
25661 3' -56 NC_005337.1 + 99469 0.67 0.858072
Target:  5'- gCGUGCGCGAgggcgucuuCGUGGccGUGCGgcgcuaCGCGg -3'
miRNA:   3'- -GCACGUGCU---------GCACCa-CACGUag----GCGU- -5'
25661 3' -56 NC_005337.1 + 128104 0.67 0.858072
Target:  5'- aGUGCuaaGCGAacugGUGGUGcGCGgcugCCGCGu -3'
miRNA:   3'- gCACG---UGCUg---CACCACaCGUa---GGCGU- -5'
25661 3' -56 NC_005337.1 + 123376 0.67 0.858072
Target:  5'- gCGUGCGCGACGcGGcgaucGUGCuUCCa-- -3'
miRNA:   3'- -GCACGUGCUGCaCCa----CACGuAGGcgu -5'
25661 3' -56 NC_005337.1 + 12332 0.67 0.833898
Target:  5'- aGUcCGCGugGUGGUGcagcGCcguccGUCCGCGg -3'
miRNA:   3'- gCAcGUGCugCACCACa---CG-----UAGGCGU- -5'
25661 3' -56 NC_005337.1 + 59183 0.67 0.825459
Target:  5'- cCGUGCgucggggcaccgGCGACGgcUGGaugGUGCAgaaggCCGCGg -3'
miRNA:   3'- -GCACG------------UGCUGC--ACCa--CACGUa----GGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.