miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 88248 0.66 0.971749
Target:  5'- aGACGUCGUGcgugcCGGCGCGCcggCgggcgCCGc -3'
miRNA:   3'- gUUGUAGCACuu---GUCGCGCGa--Ga----GGU- -5'
25667 3' -52.7 NC_005337.1 + 36211 0.66 0.971749
Target:  5'- --uCGUCGUuuuuugcgccGGccGCGGCGCGCUC-CCGg -3'
miRNA:   3'- guuGUAGCA----------CU--UGUCGCGCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 55351 0.66 0.971749
Target:  5'- aAGCG-CGUGc---GCGCGCUCUUCGa -3'
miRNA:   3'- gUUGUaGCACuuguCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 61221 0.66 0.971749
Target:  5'- aCGACGguggCGaUGGacagccGCAGCGUGCcCUCCGu -3'
miRNA:   3'- -GUUGUa---GC-ACU------UGUCGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 64594 0.66 0.968733
Target:  5'- aCGACuUCGUGAACAGCGUGgUg---- -3'
miRNA:   3'- -GUUGuAGCACUUGUCGCGCgAgaggu -5'
25667 3' -52.7 NC_005337.1 + 67803 0.66 0.968733
Target:  5'- -cGCcUCGcugggGAACAGCGCGCgcaucaUCCGu -3'
miRNA:   3'- guUGuAGCa----CUUGUCGCGCGag----AGGU- -5'
25667 3' -52.7 NC_005337.1 + 103746 0.66 0.968733
Target:  5'- --cCAUCGUGcuCAGCaagGCGCUggagacCUCCAa -3'
miRNA:   3'- guuGUAGCACuuGUCG---CGCGA------GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 72954 0.66 0.968733
Target:  5'- --uCAUCGUGcugaacAGCAGCGCGgaCUUCc -3'
miRNA:   3'- guuGUAGCAC------UUGUCGCGCgaGAGGu -5'
25667 3' -52.7 NC_005337.1 + 70884 0.66 0.965495
Target:  5'- --uCAUCGccAGCAGCgGCGC-CUCCGg -3'
miRNA:   3'- guuGUAGCacUUGUCG-CGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 9355 0.66 0.965495
Target:  5'- -cGCGUCGccUGGACGcgcgcuGCGCGUUCgagCCAg -3'
miRNA:   3'- guUGUAGC--ACUUGU------CGCGCGAGa--GGU- -5'
25667 3' -52.7 NC_005337.1 + 93828 0.66 0.965495
Target:  5'- gCGGCGUCGUcAAgGGcCGUGCgCUCCGg -3'
miRNA:   3'- -GUUGUAGCAcUUgUC-GCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 32103 0.66 0.965495
Target:  5'- -cACGUUGUacauGGCGGCGCGCaUgUCCAg -3'
miRNA:   3'- guUGUAGCAc---UUGUCGCGCG-AgAGGU- -5'
25667 3' -52.7 NC_005337.1 + 82556 0.66 0.965495
Target:  5'- gCAAguUgGUGugcagcACGGCGCGCuggaUCUCCAu -3'
miRNA:   3'- -GUUguAgCACu-----UGUCGCGCG----AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 14376 0.66 0.965495
Target:  5'- -uAUGUCGUGAcACAGCGUGCcuaugucgCUCUg -3'
miRNA:   3'- guUGUAGCACU-UGUCGCGCGa-------GAGGu -5'
25667 3' -52.7 NC_005337.1 + 95623 0.66 0.965495
Target:  5'- gCGGCGUcCGUGGGCgcgGGCcCGCUCgCCAu -3'
miRNA:   3'- -GUUGUA-GCACUUG---UCGcGCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 67736 0.66 0.962028
Target:  5'- gGACcggCG-GcGCGGCGCGCagCUCCAg -3'
miRNA:   3'- gUUGua-GCaCuUGUCGCGCGa-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 122393 0.66 0.962028
Target:  5'- gCGAgGUCGUGcugcgcGGCGGCGCGCggcgCCu -3'
miRNA:   3'- -GUUgUAGCAC------UUGUCGCGCGaga-GGu -5'
25667 3' -52.7 NC_005337.1 + 15716 0.66 0.962028
Target:  5'- gGACGUCGUGcg-AGCGCGCgaggUCCc -3'
miRNA:   3'- gUUGUAGCACuugUCGCGCGag--AGGu -5'
25667 3' -52.7 NC_005337.1 + 95884 0.66 0.962028
Target:  5'- -cGCAUCGUcuAGCAGgGCGCUCgugCUc -3'
miRNA:   3'- guUGUAGCAc-UUGUCgCGCGAGa--GGu -5'
25667 3' -52.7 NC_005337.1 + 88466 0.66 0.962028
Target:  5'- --cCGUCGagGAGCAGaacucCGCGCUCgCCAa -3'
miRNA:   3'- guuGUAGCa-CUUGUC-----GCGCGAGaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.