miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 5' -57.3 NC_005337.1 + 131261 0.65 0.850697
Target:  5'- aCUCGGAGuccuucguGCGGCUCGucucGuacuucuaccccucGGCCGUGc -3'
miRNA:   3'- -GAGCCUCuu------CGUCGAGC----U--------------CCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 88289 0.66 0.836978
Target:  5'- gUCGGuGGAGGCggacaucaAGCUCGGGGacgucagCGUGGa -3'
miRNA:   3'- gAGCC-UCUUCG--------UCGAGCUCCg------GCACU- -5'
25667 5' -57.3 NC_005337.1 + 57263 0.66 0.836978
Target:  5'- uUCGGGcacGggGCcGCgCGGGGCCGg-- -3'
miRNA:   3'- gAGCCU---CuuCGuCGaGCUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 33384 0.66 0.836978
Target:  5'- gUCGGAgcgccgccccgcGAAGUAGCUCuGGcggccGCCGUGGa -3'
miRNA:   3'- gAGCCU------------CUUCGUCGAGcUC-----CGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 81318 0.66 0.836978
Target:  5'- -gCGGAGAacGGCGGCgCGAagGGCUG-GAg -3'
miRNA:   3'- gaGCCUCU--UCGUCGaGCU--CCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 12629 0.66 0.836978
Target:  5'- cCUCGGGGGucGCcGCgucgUCGAuGCCGUGGg -3'
miRNA:   3'- -GAGCCUCUu-CGuCG----AGCUcCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 129065 0.66 0.836978
Target:  5'- gUCGGAGAGGUGGUcgCGcugcuGGCCGa-- -3'
miRNA:   3'- gAGCCUCUUCGUCGa-GCu----CCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 114657 0.66 0.820151
Target:  5'- -cCGGuGAAcGCGGgcCUCGAGGCCGc-- -3'
miRNA:   3'- gaGCCuCUU-CGUC--GAGCUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 9247 0.66 0.817567
Target:  5'- uUCcccGAGAAGUGGCUguccacgcgcucuaUGAGGCUGUGGa -3'
miRNA:   3'- gAGc--CUCUUCGUCGA--------------GCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 60271 0.66 0.814967
Target:  5'- gUCGGGGcAGGCgcgggggugggagugGGCUUGGGGUCGUc- -3'
miRNA:   3'- gAGCCUC-UUCG---------------UCGAGCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 110363 0.66 0.811478
Target:  5'- gUCGGAGGgcGGCAGC-CGucccacGGgCGUGGg -3'
miRNA:   3'- gAGCCUCU--UCGUCGaGCu-----CCgGCACU- -5'
25667 5' -57.3 NC_005337.1 + 4901 0.66 0.811478
Target:  5'- gCUCGGAGAacgGGCGGUggaCGAcGGCCu--- -3'
miRNA:   3'- -GAGCCUCU---UCGUCGa--GCU-CCGGcacu -5'
25667 5' -57.3 NC_005337.1 + 108794 0.67 0.801748
Target:  5'- gCUCuucGAGAacuucaaGGUggAGUUCGAGGCCGUGu -3'
miRNA:   3'- -GAGc--CUCU-------UCG--UCGAGCUCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 105197 0.67 0.79365
Target:  5'- -gCGGGGuccGCGGcCUgGGGGCCGcUGAg -3'
miRNA:   3'- gaGCCUCuu-CGUC-GAgCUCCGGC-ACU- -5'
25667 5' -57.3 NC_005337.1 + 73480 0.67 0.79365
Target:  5'- -gCGGAGGAccccaAGCUCGucgcGGUCGUGAa -3'
miRNA:   3'- gaGCCUCUUcg---UCGAGCu---CCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 30325 0.67 0.784512
Target:  5'- -gCGGAGGAGCGcacgcGCUCGcGGuuGuUGAa -3'
miRNA:   3'- gaGCCUCUUCGU-----CGAGCuCCggC-ACU- -5'
25667 5' -57.3 NC_005337.1 + 94458 0.67 0.784512
Target:  5'- -gCGGcGGAGCAGCUCcGGGUCGc-- -3'
miRNA:   3'- gaGCCuCUUCGUCGAGcUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 30561 0.67 0.784512
Target:  5'- aCUCGG-GGAGCuccccGUg-GAGGCCGUGc -3'
miRNA:   3'- -GAGCCuCUUCGu----CGagCUCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 32944 0.67 0.784512
Target:  5'- gCUCGGAGGcuaGGCGGUg-GAGGuuGUa- -3'
miRNA:   3'- -GAGCCUCU---UCGUCGagCUCCggCAcu -5'
25667 5' -57.3 NC_005337.1 + 129614 0.67 0.775238
Target:  5'- -gUGGAGcucguccGGCGGCUCGuGGCCGccgGGu -3'
miRNA:   3'- gaGCCUCu------UCGUCGAGCuCCGGCa--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.