miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 5' -59.3 NC_005337.1 + 133701 0.69 0.578161
Target:  5'- gCGGCUUccgcgcggcCGcGGCGUACGCGCgGCGgUGg -3'
miRNA:   3'- gGUCGAA---------GCuCCGCGUGCGCG-CGC-AC- -5'
25675 5' -59.3 NC_005337.1 + 133701 0.69 0.578161
Target:  5'- gCGGCUUccgcgcggcCGcGGCGUACGCGCgGCGgUGg -3'
miRNA:   3'- gGUCGAA---------GCuCCGCGUGCGCG-CGC-AC- -5'
25675 5' -59.3 NC_005337.1 + 133568 0.66 0.77464
Target:  5'- gCGGCcgCG-GGCGUGCGCGCGa--- -3'
miRNA:   3'- gGUCGaaGCuCCGCGUGCGCGCgcac -5'
25675 5' -59.3 NC_005337.1 + 133568 0.66 0.77464
Target:  5'- gCGGCcgCG-GGCGUGCGCGCGa--- -3'
miRNA:   3'- gGUCGaaGCuCCGCGUGCGCGCgcac -5'
25675 5' -59.3 NC_005337.1 + 133439 0.68 0.618148
Target:  5'- gCCGcCUUCGucgagcccGGGCcCGCGCGCGCGg- -3'
miRNA:   3'- -GGUcGAAGC--------UCCGcGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 133439 0.68 0.618148
Target:  5'- gCCGcCUUCGucgagcccGGGCcCGCGCGCGCGg- -3'
miRNA:   3'- -GGUcGAAGC--------UCCGcGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 133128 0.66 0.77464
Target:  5'- gCCGGCgcgcuccccgCGGaGCuGguCGCGCGCGUGc -3'
miRNA:   3'- -GGUCGaa--------GCUcCG-CguGCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 133057 0.7 0.519401
Target:  5'- gUAGCUUCGuccGCGUACGCGgCGCcgGUGg -3'
miRNA:   3'- gGUCGAAGCuc-CGCGUGCGC-GCG--CAC- -5'
25675 5' -59.3 NC_005337.1 + 132628 0.67 0.688219
Target:  5'- gCCaAGCUcgUCGccGCGgGCGCGCGCa-- -3'
miRNA:   3'- -GG-UCGA--AGCucCGCgUGCGCGCGcac -5'
25675 5' -59.3 NC_005337.1 + 132177 0.66 0.72745
Target:  5'- --cGCgacgGAGGCGCugGCGCugGCGUc -3'
miRNA:   3'- gguCGaag-CUCCGCGugCGCG--CGCAc -5'
25675 5' -59.3 NC_005337.1 + 131879 0.68 0.658295
Target:  5'- uCC-GCUgccuccUgGAGGCGgGCGCGCaCGUGg -3'
miRNA:   3'- -GGuCGA------AgCUCCGCgUGCGCGcGCAC- -5'
25675 5' -59.3 NC_005337.1 + 131648 0.71 0.463139
Target:  5'- uCC-GCUUCGAGGaGCcCGUGCGCGc- -3'
miRNA:   3'- -GGuCGAAGCUCCgCGuGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 130883 0.7 0.50032
Target:  5'- aCCAGau----GGCGCACGCGCGCu-- -3'
miRNA:   3'- -GGUCgaagcuCCGCGUGCGCGCGcac -5'
25675 5' -59.3 NC_005337.1 + 129508 0.67 0.698116
Target:  5'- cCCGcGCgucaUCGAcGCGCugcuCGCGCGCGg- -3'
miRNA:   3'- -GGU-CGa---AGCUcCGCGu---GCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 128703 0.7 0.538762
Target:  5'- --cGCUggCGAcGCgGCugGCGCGCGUGu -3'
miRNA:   3'- gguCGAa-GCUcCG-CGugCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 128531 0.66 0.756071
Target:  5'- aCAGCUUCccgauGGGUGCuACG-GCcGCGUGg -3'
miRNA:   3'- gGUCGAAGc----UCCGCG-UGCgCG-CGCAC- -5'
25675 5' -59.3 NC_005337.1 + 127876 0.66 0.756071
Target:  5'- aCAGUcUgGuGGCGCGCGgcgccggcgaGCGCGUGc -3'
miRNA:   3'- gGUCGaAgCuCCGCGUGCg---------CGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 127567 0.7 0.519401
Target:  5'- uCCGGCUgcugcUgGAGGCGgGCGCaGC-CGUGg -3'
miRNA:   3'- -GGUCGA-----AgCUCCGCgUGCG-CGcGCAC- -5'
25675 5' -59.3 NC_005337.1 + 127375 0.69 0.588118
Target:  5'- gCCGGCgcgGAccCGCGCGCGCGCGa- -3'
miRNA:   3'- -GGUCGaagCUccGCGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 126422 0.89 0.034772
Target:  5'- cCCGGCgcgCGAcGGCGCGCGUGCGCGUGu -3'
miRNA:   3'- -GGUCGaa-GCU-CCGCGUGCGCGCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.