miRNA display CGI


Results 1 - 20 of 240 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 3' -64.6 NC_005337.1 + 133695 0.71 0.224836
Target:  5'- -uCGCCgGCGGCUuccGCGCGgCCGCGGcGUa -3'
miRNA:   3'- guGCGG-CGCCGA---CGCGUgGGCGUC-CA- -5'
25684 3' -64.6 NC_005337.1 + 133695 0.71 0.224836
Target:  5'- -uCGCCgGCGGCUuccGCGCGgCCGCGGcGUa -3'
miRNA:   3'- guGCGG-CGCCGA---CGCGUgGGCGUC-CA- -5'
25684 3' -64.6 NC_005337.1 + 133541 0.66 0.449399
Target:  5'- gGCGCCGCGcucucGCccGCGUACCCcgcggccGCGGGc -3'
miRNA:   3'- gUGCGGCGC-----CGa-CGCGUGGG-------CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 133541 0.66 0.449399
Target:  5'- gGCGCCGCGcucucGCccGCGUACCCcgcggccGCGGGc -3'
miRNA:   3'- gUGCGGCGC-----CGa-CGCGUGGG-------CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 133093 0.66 0.477026
Target:  5'- -gUGCCGC-GCUcGCGCACCgccuaGCGGGc -3'
miRNA:   3'- guGCGGCGcCGA-CGCGUGGg----CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 132951 0.74 0.149372
Target:  5'- -cCGCCGCGGCcucgugcacGUGCACCUGguGGUc -3'
miRNA:   3'- guGCGGCGCCGa--------CGCGUGGGCguCCA- -5'
25684 3' -64.6 NC_005337.1 + 132596 0.7 0.285496
Target:  5'- gCGCGCUGCGGCUgcgguucagguucgcGaCGCGCCUGCGaGUg -3'
miRNA:   3'- -GUGCGGCGCCGA---------------C-GCGUGGGCGUcCA- -5'
25684 3' -64.6 NC_005337.1 + 132433 0.66 0.494368
Target:  5'- --aGCCGCGGCUGCGaccccCUCGCcaccaacguguucGGGa -3'
miRNA:   3'- gugCGGCGCCGACGCgu---GGGCG-------------UCCa -5'
25684 3' -64.6 NC_005337.1 + 132264 0.68 0.375349
Target:  5'- gACGCCGaUGGCcGUGCugCUGCGGu- -3'
miRNA:   3'- gUGCGGC-GCCGaCGCGugGGCGUCca -5'
25684 3' -64.6 NC_005337.1 + 132186 0.66 0.495288
Target:  5'- gGCGCUGgcgcUGGCgucgaGCGCGCUCGCGGa- -3'
miRNA:   3'- gUGCGGC----GCCGa----CGCGUGGGCGUCca -5'
25684 3' -64.6 NC_005337.1 + 132100 0.66 0.495288
Target:  5'- uGCGCCGUGcGCgucgGCGCcguGCgCgGCAGGc -3'
miRNA:   3'- gUGCGGCGC-CGa---CGCG---UG-GgCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 132062 0.71 0.219618
Target:  5'- gCGCGCuCGCGGCccggGcCGCGCCCGCGu-- -3'
miRNA:   3'- -GUGCG-GCGCCGa---C-GCGUGGGCGUcca -5'
25684 3' -64.6 NC_005337.1 + 131165 0.68 0.38325
Target:  5'- aCACGCUGCuGCUGCugauGCGCgCGgAGGa -3'
miRNA:   3'- -GUGCGGCGcCGACG----CGUGgGCgUCCa -5'
25684 3' -64.6 NC_005337.1 + 130891 0.66 0.450276
Target:  5'- aCACGCCGCugcaccucauGGCcGCGCAcaccuCCUGCAagcGGUc -3'
miRNA:   3'- -GUGCGGCG----------CCGaCGCGU-----GGGCGU---CCA- -5'
25684 3' -64.6 NC_005337.1 + 130242 0.71 0.252516
Target:  5'- gACGCCGCuGCacGCGUACCUGCAcaccGGUg -3'
miRNA:   3'- gUGCGGCGcCGa-CGCGUGGGCGU----CCA- -5'
25684 3' -64.6 NC_005337.1 + 128793 0.67 0.390455
Target:  5'- gCGCGCgaucaugggcgggUGCGGCUGCGC-CCUGCccccGGa -3'
miRNA:   3'- -GUGCG-------------GCGCCGACGCGuGGGCGu---CCa -5'
25684 3' -64.6 NC_005337.1 + 128509 0.67 0.432909
Target:  5'- gUACGUggucgCGCGGCUGC-CGCCCGCc--- -3'
miRNA:   3'- -GUGCG-----GCGCCGACGcGUGGGCGucca -5'
25684 3' -64.6 NC_005337.1 + 128400 0.66 0.459102
Target:  5'- cCAUGCUgGCGGCcGCucucgccacGCAgCCGCAGGc -3'
miRNA:   3'- -GUGCGG-CGCCGaCG---------CGUgGGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 127466 0.69 0.3303
Target:  5'- gCACGCUcguggacaGCGGCUGCG-AUCCgGCGGGc -3'
miRNA:   3'- -GUGCGG--------CGCCGACGCgUGGG-CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 127353 0.67 0.415938
Target:  5'- gCugGUgGCGaugauGCUGCGCGCCgGCGcGGa -3'
miRNA:   3'- -GugCGgCGC-----CGACGCGUGGgCGU-CCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.