miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 36511 1.1 0.000866
Target:  5'- uCGCGCAGCGCGCGCGUGAUCUCGGGGg -3'
miRNA:   3'- -GCGCGUCGCGCGCGCACUAGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 12585 0.7 0.466364
Target:  5'- gCGCGCguucacguuGGCGCccGCGCG-GAUgagcagguccacgacCUCGGGGg -3'
miRNA:   3'- -GCGCG---------UCGCG--CGCGCaCUA---------------GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 37218 0.7 0.480867
Target:  5'- gCGCGCcGCGCGUGCGUGG-CgaugaGGuGGc -3'
miRNA:   3'- -GCGCGuCGCGCGCGCACUaGag---CC-CC- -5'
25687 5' -60.9 NC_005337.1 + 93358 0.66 0.722623
Target:  5'- aCGCGCAGCGCcacCGgGUGAUgaugCUCGa-- -3'
miRNA:   3'- -GCGCGUCGCGc--GCgCACUA----GAGCccc -5'
25687 5' -60.9 NC_005337.1 + 59739 0.74 0.284779
Target:  5'- cCGCGCGGCGgaGCGCGUcuccgcGAgCUCGGuGGa -3'
miRNA:   3'- -GCGCGUCGCg-CGCGCA------CUaGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 102017 0.74 0.291269
Target:  5'- uCGUGCAGCGCGCggGCGUGAUCgCGu-- -3'
miRNA:   3'- -GCGCGUCGCGCG--CGCACUAGaGCccc -5'
25687 5' -60.9 NC_005337.1 + 10982 0.72 0.339208
Target:  5'- cCGCGCAGCGCGUGCGgcacgGAcacggucaccaugUC-CGaGGGc -3'
miRNA:   3'- -GCGCGUCGCGCGCGCa----CU-------------AGaGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 5574 0.72 0.339944
Target:  5'- gCGCGcCAGCcgcgucgccaGCGCGCGUGccCggCGGGGg -3'
miRNA:   3'- -GCGC-GUCG----------CGCGCGCACuaGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 109474 0.71 0.402451
Target:  5'- gCGCGCGuGgGCGCGCuuccgGAUCUCGGcGa -3'
miRNA:   3'- -GCGCGU-CgCGCGCGca---CUAGAGCC-Cc -5'
25687 5' -60.9 NC_005337.1 + 119777 0.7 0.462773
Target:  5'- aCGCauGUGGC-CGCGCGUGGUCggugCGGuGGu -3'
miRNA:   3'- -GCG--CGUCGcGCGCGCACUAGa---GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 102947 0.71 0.419179
Target:  5'- gGUGCAGUGCGagaacacCGUGGUCgUGGGGa -3'
miRNA:   3'- gCGCGUCGCGCgc-----GCACUAGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 4501 0.71 0.391808
Target:  5'- aCGUGCAGCgGCGUGUucccgaacacguugGUGGUCaUGGGGu -3'
miRNA:   3'- -GCGCGUCG-CGCGCG--------------CACUAGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 42531 0.8 0.119748
Target:  5'- gGCGCA-CGCGCGCGUGG-C-CGGGGg -3'
miRNA:   3'- gCGCGUcGCGCGCGCACUaGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 74379 0.71 0.4277
Target:  5'- gGCGCAGCuGCGCGagaCGUacAUCUCcGGGGc -3'
miRNA:   3'- gCGCGUCG-CGCGC---GCAc-UAGAG-CCCC- -5'
25687 5' -60.9 NC_005337.1 + 90648 0.78 0.161389
Target:  5'- uCGCGCGGCG-GCGC-UGAUCUCGGa- -3'
miRNA:   3'- -GCGCGUCGCgCGCGcACUAGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 68638 0.72 0.362538
Target:  5'- aGCGUGGCGgagGgGCG-GAUCUUGGGGu -3'
miRNA:   3'- gCGCGUCGCg--CgCGCaCUAGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 89959 0.7 0.445043
Target:  5'- gGCGCGGC-CGCaGCacGcgCUCGGGGg -3'
miRNA:   3'- gCGCGUCGcGCG-CGcaCuaGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 56130 0.7 0.471776
Target:  5'- uCGC-CAGCGUGCGCG-GcgUgcagCGGGGc -3'
miRNA:   3'- -GCGcGUCGCGCGCGCaCuaGa---GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 86184 0.76 0.2208
Target:  5'- aGCGCAuGCGCGCGCGcuUGAaCUCcGGGc -3'
miRNA:   3'- gCGCGU-CGCGCGCGC--ACUaGAGcCCC- -5'
25687 5' -60.9 NC_005337.1 + 31908 0.73 0.311434
Target:  5'- aGCGCGGUggccagGUGCGCGgc--CUCGGGGg -3'
miRNA:   3'- gCGCGUCG------CGCGCGCacuaGAGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.