miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 3' -54.6 NC_005337.1 + 18340 0.66 0.948085
Target:  5'- -uGGUGGuCCGAGCACGgGccCGugGc -3'
miRNA:   3'- cuCCACU-GGUUCGUGCgCuaGCugCc -5'
25695 3' -54.6 NC_005337.1 + 120459 0.66 0.948085
Target:  5'- cGGGGcGcGCuCGAGCGCGCgcugGAUCGcGCGGa -3'
miRNA:   3'- -CUCCaC-UG-GUUCGUGCG----CUAGC-UGCC- -5'
25695 3' -54.6 NC_005337.1 + 76842 0.66 0.948085
Target:  5'- -cGGUGGCCgGAGCGCGUaGUCcACGu -3'
miRNA:   3'- cuCCACUGG-UUCGUGCGcUAGcUGCc -5'
25695 3' -54.6 NC_005337.1 + 75115 0.66 0.948085
Target:  5'- -cGGUGACC-AGCGCGgcggaGGUCGAg-- -3'
miRNA:   3'- cuCCACUGGuUCGUGCg----CUAGCUgcc -5'
25695 3' -54.6 NC_005337.1 + 82562 0.66 0.943664
Target:  5'- -uGGUGugCAgcacGGCGCGCugGAUCuccauggaGACGGu -3'
miRNA:   3'- cuCCACugGU----UCGUGCG--CUAG--------CUGCC- -5'
25695 3' -54.6 NC_005337.1 + 77672 0.66 0.943664
Target:  5'- -cGGcgaaGGCCAGGaa-GCGGUCGACGa -3'
miRNA:   3'- cuCCa---CUGGUUCgugCGCUAGCUGCc -5'
25695 3' -54.6 NC_005337.1 + 57819 0.66 0.943209
Target:  5'- -uGGUG-CCGGGCAUGUGGaacaccuUCGACa- -3'
miRNA:   3'- cuCCACuGGUUCGUGCGCU-------AGCUGcc -5'
25695 3' -54.6 NC_005337.1 + 36632 0.66 0.939004
Target:  5'- -uGGUGAgCAccAGCACGCGucUgGACGu -3'
miRNA:   3'- cuCCACUgGU--UCGUGCGCu-AgCUGCc -5'
25695 3' -54.6 NC_005337.1 + 87463 0.66 0.939004
Target:  5'- gGAGaUGGCC-AGCGCGCccUCGGCGu -3'
miRNA:   3'- -CUCcACUGGuUCGUGCGcuAGCUGCc -5'
25695 3' -54.6 NC_005337.1 + 82191 0.66 0.939004
Target:  5'- -cGGccGCCGGGCGCGCacGGcCGGCGGu -3'
miRNA:   3'- cuCCacUGGUUCGUGCG--CUaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 108221 0.66 0.939004
Target:  5'- -cGGUGGCgugCGAGC-CGCGcUCGcCGGa -3'
miRNA:   3'- cuCCACUG---GUUCGuGCGCuAGCuGCC- -5'
25695 3' -54.6 NC_005337.1 + 132623 0.66 0.93756
Target:  5'- -cGGcGGCCAagcucgucgccgcgGGCGCGCGcAUCGACc- -3'
miRNA:   3'- cuCCaCUGGU--------------UCGUGCGC-UAGCUGcc -5'
25695 3' -54.6 NC_005337.1 + 57281 0.66 0.934105
Target:  5'- -cGG-GGCCGGcGCGCGCGGcugCGGCGc -3'
miRNA:   3'- cuCCaCUGGUU-CGUGCGCUa--GCUGCc -5'
25695 3' -54.6 NC_005337.1 + 123283 0.66 0.928963
Target:  5'- -uGGUGACCGuguccgugccGCACGCGcugCG-CGGa -3'
miRNA:   3'- cuCCACUGGUu---------CGUGCGCua-GCuGCC- -5'
25695 3' -54.6 NC_005337.1 + 95592 0.66 0.928963
Target:  5'- cGGGGUcGGCCGGGUgcagcaGCGCGccaUGGCGGc -3'
miRNA:   3'- -CUCCA-CUGGUUCG------UGCGCua-GCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 36225 0.66 0.928963
Target:  5'- uGAGcGUGGCC-AGCAUGCGGUCc---- -3'
miRNA:   3'- -CUC-CACUGGuUCGUGCGCUAGcugcc -5'
25695 3' -54.6 NC_005337.1 + 13693 0.66 0.928963
Target:  5'- cGAGGcaGACUAGGUGCGCGGUgGAg-- -3'
miRNA:   3'- -CUCCa-CUGGUUCGUGCGCUAgCUgcc -5'
25695 3' -54.6 NC_005337.1 + 76834 0.66 0.928963
Target:  5'- -cGGUGgauGCgCAGcGCACGCGGUagaugGACGGg -3'
miRNA:   3'- cuCCAC---UG-GUU-CGUGCGCUAg----CUGCC- -5'
25695 3' -54.6 NC_005337.1 + 124297 0.66 0.928963
Target:  5'- --cGUGGCCGAGgACGCGGccuccgUCG-CGGc -3'
miRNA:   3'- cucCACUGGUUCgUGCGCU------AGCuGCC- -5'
25695 3' -54.6 NC_005337.1 + 91089 0.67 0.923578
Target:  5'- -cGGUGACCGuGCuCGgGAUgGGCGu -3'
miRNA:   3'- cuCCACUGGUuCGuGCgCUAgCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.