miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 3' -62.9 NC_005337.1 + 128467 0.66 0.583159
Target:  5'- cGGaCCGGCGCgggagacCGCGUGcucgcGGGCGUGcGUc -3'
miRNA:   3'- -CC-GGCCGCGa------GUGCGU-----CCCGCAC-CAc -5'
25701 3' -62.9 NC_005337.1 + 94751 0.66 0.583159
Target:  5'- cGCUGGa-CUcCAgGUAGGGCGUGGa- -3'
miRNA:   3'- cCGGCCgcGA-GUgCGUCCCGCACCac -5'
25701 3' -62.9 NC_005337.1 + 32374 0.66 0.583159
Target:  5'- aGCCGGUGCUUcaGCAuGGaGUGGUGc -3'
miRNA:   3'- cCGGCCGCGAGugCGUcCCgCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 19339 0.66 0.582183
Target:  5'- uGGCCaGCaGCUcCGCGUggcucAGGGCGUccauguugagguaGGUGg -3'
miRNA:   3'- -CCGGcCG-CGA-GUGCG-----UCCCGCA-------------CCAC- -5'
25701 3' -62.9 NC_005337.1 + 122880 0.66 0.573414
Target:  5'- cGGCC-GCGCgCACGCuGaacgacuucGGCGUGGg- -3'
miRNA:   3'- -CCGGcCGCGaGUGCGuC---------CCGCACCac -5'
25701 3' -62.9 NC_005337.1 + 18063 0.66 0.563708
Target:  5'- cGCaaacugGGCGCaCACGCgcuggcagAGGaGCGUGGUGu -3'
miRNA:   3'- cCGg-----CCGCGaGUGCG--------UCC-CGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 50380 0.66 0.563708
Target:  5'- gGGCacgGGCGcCUgGCGCGGGggcgcgccgcGCGUcGGUGa -3'
miRNA:   3'- -CCGg--CCGC-GAgUGCGUCC----------CGCA-CCAC- -5'
25701 3' -62.9 NC_005337.1 + 108727 0.66 0.563708
Target:  5'- gGGUCGGCGgaCAucggauucuCGCGGcGCGUGGg- -3'
miRNA:   3'- -CCGGCCGCgaGU---------GCGUCcCGCACCac -5'
25701 3' -62.9 NC_005337.1 + 6024 0.66 0.554045
Target:  5'- gGGCgGGCGC-CA-GCAGGGcCGUGc-- -3'
miRNA:   3'- -CCGgCCGCGaGUgCGUCCC-GCACcac -5'
25701 3' -62.9 NC_005337.1 + 80508 0.66 0.554045
Target:  5'- cGGCCGGgGgCgggCACGCcgaggcccGGGGCGcGGa- -3'
miRNA:   3'- -CCGGCCgC-Ga--GUGCG--------UCCCGCaCCac -5'
25701 3' -62.9 NC_005337.1 + 10326 0.66 0.554045
Target:  5'- uGCa-GCGCgaccggCuCGCGGGGCGUGGg- -3'
miRNA:   3'- cCGgcCGCGa-----GuGCGUCCCGCACCac -5'
25701 3' -62.9 NC_005337.1 + 106250 0.66 0.544432
Target:  5'- uGCCGGCgGCaggCgAUGCAGGGCagcGUGGa- -3'
miRNA:   3'- cCGGCCG-CGa--G-UGCGUCCCG---CACCac -5'
25701 3' -62.9 NC_005337.1 + 57266 0.66 0.544432
Target:  5'- gGGCaCGGgGC-CGCGCGGGGCc-GGc- -3'
miRNA:   3'- -CCG-GCCgCGaGUGCGUCCCGcaCCac -5'
25701 3' -62.9 NC_005337.1 + 48415 0.66 0.544432
Target:  5'- cGCuCGGCGUacUgGCGCuGuGCGUGGUGu -3'
miRNA:   3'- cCG-GCCGCG--AgUGCGuCcCGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 28246 0.66 0.544432
Target:  5'- cGCCGucGCGCggcaccaCGCGCAcGuGCGUGGUGu -3'
miRNA:   3'- cCGGC--CGCGa------GUGCGUcC-CGCACCAC- -5'
25701 3' -62.9 NC_005337.1 + 10830 0.66 0.544432
Target:  5'- uGCUGGCGCUgcggCGCGgAGGGCGa---- -3'
miRNA:   3'- cCGGCCGCGA----GUGCgUCCCGCaccac -5'
25701 3' -62.9 NC_005337.1 + 103918 0.67 0.534874
Target:  5'- -uCCGcGUGCUCcugucCGCGGGGC-UGGUGu -3'
miRNA:   3'- ccGGC-CGCGAGu----GCGUCCCGcACCAC- -5'
25701 3' -62.9 NC_005337.1 + 100220 0.67 0.534874
Target:  5'- cGGCCGGCGC-CGCGUgc-GCGUGa-- -3'
miRNA:   3'- -CCGGCCGCGaGUGCGuccCGCACcac -5'
25701 3' -62.9 NC_005337.1 + 65397 0.67 0.525376
Target:  5'- uGGCCagcuGCGCgaagauguucUCcgGCGCGGGGC-UGGUGg -3'
miRNA:   3'- -CCGGc---CGCG----------AG--UGCGUCCCGcACCAC- -5'
25701 3' -62.9 NC_005337.1 + 130152 0.67 0.525376
Target:  5'- cGCUGGCGCUCGCGCgcuuucggAGGcCGUGc-- -3'
miRNA:   3'- cCGGCCGCGAGUGCG--------UCCcGCACcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.