miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 5' -55.8 NC_005337.1 + 46304 0.66 0.895326
Target:  5'- uGgGCCACCUGC-UGGACcuccAGGAGg- -3'
miRNA:   3'- uCgUGGUGGACGcACUUGc---UCCUCac -5'
25701 5' -55.8 NC_005337.1 + 99448 0.66 0.894658
Target:  5'- uGgGCCACCUcguggacgcgcGCGUGcGCGAGGGcgucuucGUGg -3'
miRNA:   3'- uCgUGGUGGA-----------CGCACuUGCUCCU-------CAC- -5'
25701 5' -55.8 NC_005337.1 + 73247 0.66 0.877208
Target:  5'- cGCaACUACCUG-GUGGaggcguacucggaccGCGAGGAGg- -3'
miRNA:   3'- uCG-UGGUGGACgCACU---------------UGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 87873 0.66 0.874284
Target:  5'- gAGCGuCUucuUCUGCGUGGGCGAgaaGGGGUu -3'
miRNA:   3'- -UCGU-GGu--GGACGCACUUGCU---CCUCAc -5'
25701 5' -55.8 NC_005337.1 + 40208 0.66 0.874284
Target:  5'- gAGCACCACCUucuuCGUcAGCGcGGAGa- -3'
miRNA:   3'- -UCGUGGUGGAc---GCAcUUGCuCCUCac -5'
25701 5' -55.8 NC_005337.1 + 123551 0.66 0.874284
Target:  5'- -cCACCGcCCUGaccacauggcCGUGGACGcGGAGUGc -3'
miRNA:   3'- ucGUGGU-GGAC----------GCACUUGCuCCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 99543 0.66 0.866817
Target:  5'- uGCGCCGCCgacUGCucgcGCGAGGAGg- -3'
miRNA:   3'- uCGUGGUGG---ACGcacuUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 72459 0.67 0.851239
Target:  5'- aAGCucGCCGCCgccaugcGCGUGGACGuGGAc-- -3'
miRNA:   3'- -UCG--UGGUGGa------CGCACUUGCuCCUcac -5'
25701 5' -55.8 NC_005337.1 + 22465 0.67 0.851239
Target:  5'- gGGCGauauCCUggGCGUGGuggacuccgccgACGAGGAGUGg -3'
miRNA:   3'- -UCGUggu-GGA--CGCACU------------UGCUCCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 83123 0.67 0.851239
Target:  5'- cGCGUCGCuCUGCGUGGACuuGAGGuAGUc -3'
miRNA:   3'- uCGUGGUG-GACGCACUUG--CUCC-UCAc -5'
25701 5' -55.8 NC_005337.1 + 43277 0.67 0.840672
Target:  5'- cAGCGCCACCUGCuacaccuucgcgcuGUucGAccACGAGGAcGUc -3'
miRNA:   3'- -UCGUGGUGGACG--------------CA--CU--UGCUCCU-CAc -5'
25701 5' -55.8 NC_005337.1 + 80028 0.67 0.834845
Target:  5'- cGCACCcgGCCcggacGCGccGGACGAGGAGa- -3'
miRNA:   3'- uCGUGG--UGGa----CGCa-CUUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 101205 0.67 0.834845
Target:  5'- gGGCACCGCCUGCuucgcgGAGguCGcGGAGg- -3'
miRNA:   3'- -UCGUGGUGGACGca----CUU--GCuCCUCac -5'
25701 5' -55.8 NC_005337.1 + 10309 0.67 0.834845
Target:  5'- -aCACCauGCCUGUGUucauGACGAuGGAGUGg -3'
miRNA:   3'- ucGUGG--UGGACGCAc---UUGCU-CCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 37219 0.67 0.82636
Target:  5'- cGCGCCGCgCgUGCGUGGcgAUGAGGuGg- -3'
miRNA:   3'- uCGUGGUG-G-ACGCACU--UGCUCCuCac -5'
25701 5' -55.8 NC_005337.1 + 56206 0.67 0.817693
Target:  5'- cGCGCUACCUGCa-GGACGuggcGGAGg- -3'
miRNA:   3'- uCGUGGUGGACGcaCUUGCu---CCUCac -5'
25701 5' -55.8 NC_005337.1 + 108236 0.68 0.808852
Target:  5'- cGCGCuCGCCggaguuCGUGAGCGAGGuGg- -3'
miRNA:   3'- uCGUG-GUGGac----GCACUUGCUCCuCac -5'
25701 5' -55.8 NC_005337.1 + 25456 0.68 0.808852
Target:  5'- cGGCACCguggacGCgUGCGUGGACGAGa---- -3'
miRNA:   3'- -UCGUGG------UGgACGCACUUGCUCcucac -5'
25701 5' -55.8 NC_005337.1 + 86105 0.68 0.808852
Target:  5'- cAGCAgCGCCUccGCGc--GCGAGGAGUc -3'
miRNA:   3'- -UCGUgGUGGA--CGCacuUGCUCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 37300 0.68 0.799847
Target:  5'- cGCACCGCCcgGCc---GCGAGGAGcUGg -3'
miRNA:   3'- uCGUGGUGGa-CGcacuUGCUCCUC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.