miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 3' -60 NC_005337.1 + 16381 1.08 0.001034
Target:  5'- cAGCGCCGCCCAGCACACGCACACUGAg -3'
miRNA:   3'- -UCGCGGCGGGUCGUGUGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 62606 0.74 0.281095
Target:  5'- uGuCGCCGCCguGCACcCGCGCGUUGAa -3'
miRNA:   3'- uC-GCGGCGGguCGUGuGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 65962 0.74 0.281095
Target:  5'- cGUGCCGCCCuccucgGGCACGCGCGucCACg-- -3'
miRNA:   3'- uCGCGGCGGG------UCGUGUGCGU--GUGacu -5'
25711 3' -60 NC_005337.1 + 90371 0.66 0.710765
Target:  5'- cGCGCgGCCUcuucccGGcCGCGCGUGCACa-- -3'
miRNA:   3'- uCGCGgCGGG------UC-GUGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 11881 0.76 0.200922
Target:  5'- cGCGCCGCCgcgCAGCACgaccucGCGCACGCa-- -3'
miRNA:   3'- uCGCGGCGG---GUCGUG------UGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 15508 0.76 0.200922
Target:  5'- cAGCGUCGCCagcaAGCAuguCACGCACACcGAc -3'
miRNA:   3'- -UCGCGGCGGg---UCGU---GUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 132741 0.76 0.211024
Target:  5'- cGGuCGCCGCCC-GCACACGaaguggcggaCGCGCUGGc -3'
miRNA:   3'- -UC-GCGGCGGGuCGUGUGC----------GUGUGACU- -5'
25711 3' -60 NC_005337.1 + 132845 0.75 0.215711
Target:  5'- cGGCGCCGCcgcgcucgcagacCCAGacaaACACGCACACgcgGAc -3'
miRNA:   3'- -UCGCGGCG-------------GGUCg---UGUGCGUGUGa--CU- -5'
25711 3' -60 NC_005337.1 + 118794 0.75 0.238201
Target:  5'- cGGCGCCGUCguGC-CGCGCGCGCc-- -3'
miRNA:   3'- -UCGCGGCGGguCGuGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 85648 0.74 0.281095
Target:  5'- uGGCGuCCGCCgAGCACAUGUucuGCACaGAc -3'
miRNA:   3'- -UCGC-GGCGGgUCGUGUGCG---UGUGaCU- -5'
25711 3' -60 NC_005337.1 + 69442 0.74 0.249867
Target:  5'- cGGCGCCaGCUC-GCGCGCGCACAUg-- -3'
miRNA:   3'- -UCGCGG-CGGGuCGUGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 121350 0.75 0.232541
Target:  5'- cGCGCCGCaCCAGC-CACucgGCGCACggGAa -3'
miRNA:   3'- uCGCGGCG-GGUCGuGUG---CGUGUGa-CU- -5'
25711 3' -60 NC_005337.1 + 33030 0.85 0.050656
Target:  5'- cGCGCCGUCCAGCgcgaGCACGCGCGCgGAc -3'
miRNA:   3'- uCGCGGCGGGUCG----UGUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 25108 0.74 0.268246
Target:  5'- cGCGCgGCgCGGCGCGCGCggACGCgUGAa -3'
miRNA:   3'- uCGCGgCGgGUCGUGUGCG--UGUG-ACU- -5'
25711 3' -60 NC_005337.1 + 1108 0.77 0.163389
Target:  5'- cAGCGCCGCCgccgggagcagccgCAGCACGCGCGCGa--- -3'
miRNA:   3'- -UCGCGGCGG--------------GUCGUGUGCGUGUgacu -5'
25711 3' -60 NC_005337.1 + 105051 0.75 0.216237
Target:  5'- aGGCGaCGCCCGGC-CGCGCgGCGCUGc -3'
miRNA:   3'- -UCGCgGCGGGUCGuGUGCG-UGUGACu -5'
25711 3' -60 NC_005337.1 + 95135 0.74 0.268246
Target:  5'- cAGCGUCGCCgucauaAGCACgagcgaGCGCACGCUGc -3'
miRNA:   3'- -UCGCGGCGGg-----UCGUG------UGCGUGUGACu -5'
25711 3' -60 NC_005337.1 + 97734 0.74 0.281095
Target:  5'- cGGCGCCGCCCAGCcGCcggggACGCcCGCg-- -3'
miRNA:   3'- -UCGCGGCGGGUCG-UG-----UGCGuGUGacu -5'
25711 3' -60 NC_005337.1 + 65935 0.77 0.181976
Target:  5'- cGCGCCGUCCuccGGCACGgGCACGCg-- -3'
miRNA:   3'- uCGCGGCGGG---UCGUGUgCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 39481 0.76 0.205919
Target:  5'- cGUGCCGCgCGaCGCGCGCGCGCUGc -3'
miRNA:   3'- uCGCGGCGgGUcGUGUGCGUGUGACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.