miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 5' -53.1 NC_005337.1 + 67479 0.66 0.96953
Target:  5'- aGAUCAUCagCGUcuucACGUaGUUGGagagcacgcccagcgGCCCGCg -3'
miRNA:   3'- -CUAGUAGa-GCG----UGCA-CGACU---------------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 124101 0.66 0.968295
Target:  5'- aGGUCuucgcgCUCGC-CGgcaaggGCUGGACgCGCc -3'
miRNA:   3'- -CUAGua----GAGCGuGCa-----CGACUUGgGCG- -5'
25711 5' -53.1 NC_005337.1 + 63984 0.66 0.968295
Target:  5'- uGGUgAUgUggUGCGCGUGCUuGugCCGCg -3'
miRNA:   3'- -CUAgUAgA--GCGUGCACGAcUugGGCG- -5'
25711 5' -53.1 NC_005337.1 + 50758 0.66 0.968295
Target:  5'- uGAUCG-CgggCGCacGCGUGCgGuuCCCGCg -3'
miRNA:   3'- -CUAGUaGa--GCG--UGCACGaCuuGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 58474 0.66 0.965055
Target:  5'- --aCGUCUCGC---UGCUGAcggaGCuCCGCg -3'
miRNA:   3'- cuaGUAGAGCGugcACGACU----UG-GGCG- -5'
25711 5' -53.1 NC_005337.1 + 6139 0.66 0.965055
Target:  5'- cGAgcgCGUUUCGCGCGUucacGCgGcAGCCgCGCa -3'
miRNA:   3'- -CUa--GUAGAGCGUGCA----CGaC-UUGG-GCG- -5'
25711 5' -53.1 NC_005337.1 + 121682 0.66 0.964718
Target:  5'- -cUCAUC-CGCGCGgGCgccaacgUGAACgCGCg -3'
miRNA:   3'- cuAGUAGaGCGUGCaCG-------ACUUGgGCG- -5'
25711 5' -53.1 NC_005337.1 + 51516 0.66 0.963002
Target:  5'- cGAUCAUCauggCGCucuucgGCGUGCggcugccgggccugGAGgCCGCg -3'
miRNA:   3'- -CUAGUAGa---GCG------UGCACGa-------------CUUgGGCG- -5'
25711 5' -53.1 NC_005337.1 + 114733 0.66 0.961588
Target:  5'- --aCGUC-CgGCGCGUGCUGGACggGCu -3'
miRNA:   3'- cuaGUAGaG-CGUGCACGACUUGggCG- -5'
25711 5' -53.1 NC_005337.1 + 98716 0.66 0.961588
Target:  5'- cAUCcgCUCGCgcggcgcccugcGCGUGCUGA--CCGUc -3'
miRNA:   3'- cUAGuaGAGCG------------UGCACGACUugGGCG- -5'
25711 5' -53.1 NC_005337.1 + 28174 0.66 0.960504
Target:  5'- aGGUgCGUC-CGCugGUGCccuaGAgcaugcccucguacGCCCGCg -3'
miRNA:   3'- -CUA-GUAGaGCGugCACGa---CU--------------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 131561 0.66 0.957891
Target:  5'- cGUCGUCgCGCuCGUGCUcc-UCCGCg -3'
miRNA:   3'- cUAGUAGaGCGuGCACGAcuuGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 120233 0.66 0.957891
Target:  5'- --gCAUCgccgagcaGUGCGUGUacGAACCCGCa -3'
miRNA:   3'- cuaGUAGag------CGUGCACGa-CUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 45936 0.66 0.957891
Target:  5'- cGGUCuUCUCGCGCGcGCc-GGCgCGCg -3'
miRNA:   3'- -CUAGuAGAGCGUGCaCGacUUGgGCG- -5'
25711 5' -53.1 NC_005337.1 + 80090 0.66 0.957891
Target:  5'- --aCGUCcggUGCGCGUGCcUGAAgCCGa -3'
miRNA:   3'- cuaGUAGa--GCGUGCACG-ACUUgGGCg -5'
25711 5' -53.1 NC_005337.1 + 7091 0.66 0.957891
Target:  5'- cGGUCAUgUCGUACGcGUcaGACUCGCg -3'
miRNA:   3'- -CUAGUAgAGCGUGCaCGacUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 88990 0.66 0.957891
Target:  5'- -----cCUgGCGCG-GgaGAACCCGCu -3'
miRNA:   3'- cuaguaGAgCGUGCaCgaCUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 44304 0.66 0.953957
Target:  5'- gGcgCcgCUCccccgaGCGCGUGCUGcGgCCGCg -3'
miRNA:   3'- -CuaGuaGAG------CGUGCACGACuUgGGCG- -5'
25711 5' -53.1 NC_005337.1 + 41691 0.66 0.953957
Target:  5'- cGUCGUCgaaGCACGUcCgGAGCCgGCc -3'
miRNA:   3'- cUAGUAGag-CGUGCAcGaCUUGGgCG- -5'
25711 5' -53.1 NC_005337.1 + 119969 0.66 0.953957
Target:  5'- -----cCUCgaGCGCGcGCUGAGCCUGUa -3'
miRNA:   3'- cuaguaGAG--CGUGCaCGACUUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.