miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25712 3' -56.6 NC_005337.1 + 92120 0.66 0.878495
Target:  5'- gAGUcGGUGCUcuuccagaccccggaCGCGCCGCGggccaGCgCCg -3'
miRNA:   3'- -UCA-UCGCGA---------------GCGCGGCGCaaa--CGaGG- -5'
25712 3' -56.6 NC_005337.1 + 50902 0.66 0.875614
Target:  5'- --gGGCGCgCGCGCCcaGCGgccGgUCCg -3'
miRNA:   3'- ucaUCGCGaGCGCGG--CGCaaaCgAGG- -5'
25712 3' -56.6 NC_005337.1 + 49814 0.66 0.875614
Target:  5'- cGGaGGUGCcggcCGCGCCcuccGCGg--GCUCCu -3'
miRNA:   3'- -UCaUCGCGa---GCGCGG----CGCaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 36883 0.66 0.875614
Target:  5'- cAGUAGaugcgGUUCGCGCgGCGcg-GCguggCCg -3'
miRNA:   3'- -UCAUCg----CGAGCGCGgCGCaaaCGa---GG- -5'
25712 3' -56.6 NC_005337.1 + 63415 0.66 0.875614
Target:  5'- uGgcGCGCUCGUacaGCgCGCGguu-CUCCg -3'
miRNA:   3'- uCauCGCGAGCG---CG-GCGCaaacGAGG- -5'
25712 3' -56.6 NC_005337.1 + 29209 0.66 0.875614
Target:  5'- aGGaGGCGCUgcgcaGCGCCGCGcggccggGCgucgCCu -3'
miRNA:   3'- -UCaUCGCGAg----CGCGGCGCaaa----CGa---GG- -5'
25712 3' -56.6 NC_005337.1 + 109904 0.66 0.875614
Target:  5'- cGUGcGCGUggaagaCGUGUCGCGUgggcaUGCUCUc -3'
miRNA:   3'- uCAU-CGCGa-----GCGCGGCGCAa----ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 56335 0.66 0.875614
Target:  5'- cGUGGUGCUCaaGCUGCccacGCUCUu -3'
miRNA:   3'- uCAUCGCGAGcgCGGCGcaaaCGAGG- -5'
25712 3' -56.6 NC_005337.1 + 26081 0.66 0.87416
Target:  5'- uGUAGCGCggcgcggggaaGCGCCGcCGgaUG-UCCa -3'
miRNA:   3'- uCAUCGCGag---------CGCGGC-GCaaACgAGG- -5'
25712 3' -56.6 NC_005337.1 + 117339 0.66 0.872697
Target:  5'- cGGUGGCGacggccaacgUCG-GCCGCGUggacgugcgcacGCUCCa -3'
miRNA:   3'- -UCAUCGCg---------AGCgCGGCGCAaa----------CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 67277 0.66 0.868257
Target:  5'- uAGUAGCGCgacuugaGCcCCGCGUUgagGCg-- -3'
miRNA:   3'- -UCAUCGCGag-----CGcGGCGCAAa--CGagg -5'
25712 3' -56.6 NC_005337.1 + 36361 0.66 0.868257
Target:  5'- gAGU-GCGaCUCGCGacacaCGCGcccgaucaucUGCUCCa -3'
miRNA:   3'- -UCAuCGC-GAGCGCg----GCGCaa--------ACGAGG- -5'
25712 3' -56.6 NC_005337.1 + 14182 0.66 0.868257
Target:  5'- cAGUAGCGUgucCGUGUCGCagg-GgUCCg -3'
miRNA:   3'- -UCAUCGCGa--GCGCGGCGcaaaCgAGG- -5'
25712 3' -56.6 NC_005337.1 + 125912 0.66 0.868257
Target:  5'- -uUGGgaGCUCGUGCCGCGccucgcagaUUGCcCCg -3'
miRNA:   3'- ucAUCg-CGAGCGCGGCGCa--------AACGaGG- -5'
25712 3' -56.6 NC_005337.1 + 68193 0.66 0.868257
Target:  5'- --cAGCGCcucCGcCGCCGCGgccGCgUCCg -3'
miRNA:   3'- ucaUCGCGa--GC-GCGGCGCaaaCG-AGG- -5'
25712 3' -56.6 NC_005337.1 + 39106 0.66 0.860685
Target:  5'- cGUGGCGCggaagcucgCGgGCaGCGUgcGCUCg -3'
miRNA:   3'- uCAUCGCGa--------GCgCGgCGCAaaCGAGg -5'
25712 3' -56.6 NC_005337.1 + 132182 0.66 0.860685
Target:  5'- cGGaGGCGCUgGCGCUgGCGUcgagcgcGCUCg -3'
miRNA:   3'- -UCaUCGCGAgCGCGG-CGCAaa-----CGAGg -5'
25712 3' -56.6 NC_005337.1 + 25069 0.66 0.860685
Target:  5'- gGGcGGCGUUCGUcaaGCUGCGcgacgccgaGCUCCg -3'
miRNA:   3'- -UCaUCGCGAGCG---CGGCGCaaa------CGAGG- -5'
25712 3' -56.6 NC_005337.1 + 111533 0.66 0.860685
Target:  5'- ---cGCGCUC-CGCCGCGUgcaGgUCg -3'
miRNA:   3'- ucauCGCGAGcGCGGCGCAaa-CgAGg -5'
25712 3' -56.6 NC_005337.1 + 2620 0.66 0.860685
Target:  5'- --cAGCGCggCGCGCa-CGg--GCUCCu -3'
miRNA:   3'- ucaUCGCGa-GCGCGgcGCaaaCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.