miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 5' -59.6 NC_005337.1 + 53047 0.66 0.732904
Target:  5'- cCGGCg-CAACGGCCUG-GUCucgGACa -3'
miRNA:   3'- -GCCGgaGUUGCCGGACgCAGucgCUG- -5'
25735 5' -59.6 NC_005337.1 + 92074 0.66 0.732904
Target:  5'- cCGGCUguaccggCAGCGGCUggacGCG-CAGCugGACg -3'
miRNA:   3'- -GCCGGa------GUUGCCGGa---CGCaGUCG--CUG- -5'
25735 5' -59.6 NC_005337.1 + 29362 0.66 0.732904
Target:  5'- uGGugcCCUCGACGGCg-GcCGUC-GCGGCg -3'
miRNA:   3'- gCC---GGAGUUGCCGgaC-GCAGuCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 68530 0.66 0.732904
Target:  5'- uCGGCuCUgAGCGuGCC-GCGcUAGUGACg -3'
miRNA:   3'- -GCCG-GAgUUGC-CGGaCGCaGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 94691 0.66 0.732904
Target:  5'- aGGgCUCGggcacgaacacGCGGCCgGUGUCGuaGACg -3'
miRNA:   3'- gCCgGAGU-----------UGCCGGaCGCAGUcgCUG- -5'
25735 5' -59.6 NC_005337.1 + 9742 0.66 0.729997
Target:  5'- gCGGUCaCGACGGCgCUgGCGUCGaugucgguaucgucGCGAUg -3'
miRNA:   3'- -GCCGGaGUUGCCG-GA-CGCAGU--------------CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 64409 0.66 0.723184
Target:  5'- aGGUCcagCAGCGGCC-GC-UUGGCGGCc -3'
miRNA:   3'- gCCGGa--GUUGCCGGaCGcAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 61344 0.66 0.723184
Target:  5'- cCGGCCgUCGAUGGUgUGCGgguuguugcUguGCGAg -3'
miRNA:   3'- -GCCGG-AGUUGCCGgACGC---------AguCGCUg -5'
25735 5' -59.6 NC_005337.1 + 102234 0.66 0.719273
Target:  5'- cCGGCUguggcgcgugcaGACGGCCgggUGCGUCAccGUGGCc -3'
miRNA:   3'- -GCCGGag----------UUGCCGG---ACGCAGU--CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 98458 0.66 0.713387
Target:  5'- uCGGCCU--GCGGCaUGCGUgcgcaaggCAGgGGCg -3'
miRNA:   3'- -GCCGGAguUGCCGgACGCA--------GUCgCUG- -5'
25735 5' -59.6 NC_005337.1 + 104572 0.66 0.713387
Target:  5'- gCGcGCCUCGcGCGuCCguccgGuCGUCGGCGGCg -3'
miRNA:   3'- -GC-CGGAGU-UGCcGGa----C-GCAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 45511 0.66 0.713387
Target:  5'- aGGCCUCcAC-GUCgGUGUCGGCGcCg -3'
miRNA:   3'- gCCGGAGuUGcCGGaCGCAGUCGCuG- -5'
25735 5' -59.6 NC_005337.1 + 11619 0.66 0.703523
Target:  5'- gGGCCaccugcUCGACGaGUC-GCGUCuuGCGGCg -3'
miRNA:   3'- gCCGG------AGUUGC-CGGaCGCAGu-CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 120803 0.66 0.703523
Target:  5'- gCGGCgcgaGACGGUCUGCGaCGacuGCGACu -3'
miRNA:   3'- -GCCGgag-UUGCCGGACGCaGU---CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 84466 0.66 0.703523
Target:  5'- gGGC----GCGGCCggcaccucCGUCAGCGACg -3'
miRNA:   3'- gCCGgaguUGCCGGac------GCAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 86661 0.66 0.703523
Target:  5'- uGGCuUUCAgcGCGGCCgcgcgcgcgGCGUCgcccacgcccAGCGGCu -3'
miRNA:   3'- gCCG-GAGU--UGCCGGa--------CGCAG----------UCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 3652 0.67 0.687621
Target:  5'- gCGGCCUCGucguccgcgcagucgGgGGuCUUGCGUCGcgcccgacGCGGCu -3'
miRNA:   3'- -GCCGGAGU---------------UgCC-GGACGCAGU--------CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 133473 0.67 0.683627
Target:  5'- aCGGCUccgCGGagcUGGUCUGCcucgucGUCGGCGGCg -3'
miRNA:   3'- -GCCGGa--GUU---GCCGGACG------CAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 1943 0.67 0.683627
Target:  5'- uCGGUCgugcgCAugucGCuGCCcGCGUCAGCGAg -3'
miRNA:   3'- -GCCGGa----GU----UGcCGGaCGCAGUCGCUg -5'
25735 5' -59.6 NC_005337.1 + 3455 0.67 0.683627
Target:  5'- -cGCCUgaucaCGGCGGCaCUGgGUCGucGCGACu -3'
miRNA:   3'- gcCGGA-----GUUGCCG-GACgCAGU--CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.