miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25744 5' -64.3 NC_005337.1 + 24347 0.66 0.532206
Target:  5'- cCGCGGUGCAGuGCcugcuggaggaguuCUCCGcGCUGuguCCGGg -3'
miRNA:   3'- -GCGCCGCGUC-CGc-------------GAGGU-CGAC---GGCC- -5'
25744 5' -64.3 NC_005337.1 + 44657 0.66 0.528437
Target:  5'- aGCgGGCGCuacguGGGCGaCUCCgagauaGGCgugGCCGa -3'
miRNA:   3'- gCG-CCGCG-----UCCGC-GAGG------UCGa--CGGCc -5'
25744 5' -64.3 NC_005337.1 + 111265 0.66 0.528437
Target:  5'- aCGCGGCGCAaGUGC-CgCAGCaUGCuCGc -3'
miRNA:   3'- -GCGCCGCGUcCGCGaG-GUCG-ACG-GCc -5'
25744 5' -64.3 NC_005337.1 + 86731 0.66 0.528437
Target:  5'- uCGCGGCauCAGGCccacgaggucccGCUCCGGCacgaugGCCa- -3'
miRNA:   3'- -GCGCCGc-GUCCG------------CGAGGUCGa-----CGGcc -5'
25744 5' -64.3 NC_005337.1 + 52476 0.66 0.527496
Target:  5'- cCGCGGCGCccGCGagagCCGGCUcaugcgcGCCa- -3'
miRNA:   3'- -GCGCCGCGucCGCga--GGUCGA-------CGGcc -5'
25744 5' -64.3 NC_005337.1 + 9638 0.66 0.527496
Target:  5'- gGUGGCGUaccucgucuccggAGGCGCgcaaugccUCCAGC-GCCa- -3'
miRNA:   3'- gCGCCGCG-------------UCCGCG--------AGGUCGaCGGcc -5'
25744 5' -64.3 NC_005337.1 + 105126 0.66 0.527496
Target:  5'- aCGCGGCGCuccggacGGcCGUcgCCGacaugguGCUGCUGGc -3'
miRNA:   3'- -GCGCCGCGu------CC-GCGa-GGU-------CGACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 25275 0.66 0.519058
Target:  5'- aCGCGGCGCuggaguucGCGCgcaCGGCgGgCGGg -3'
miRNA:   3'- -GCGCCGCGuc------CGCGag-GUCGaCgGCC- -5'
25744 5' -64.3 NC_005337.1 + 113144 0.66 0.519058
Target:  5'- uGCGGUacgugcuguucGCGGuGCGCUgCguGGCgGCCGGc -3'
miRNA:   3'- gCGCCG-----------CGUC-CGCGAgG--UCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 115432 0.66 0.519058
Target:  5'- uGCGGCGCGugcuGGCGauagagCCGGCguacgacgcGCUGGc -3'
miRNA:   3'- gCGCCGCGU----CCGCga----GGUCGa--------CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 122342 0.66 0.519058
Target:  5'- uCGaCGGCGC--GCGC-CCGGgUGCCGc -3'
miRNA:   3'- -GC-GCCGCGucCGCGaGGUCgACGGCc -5'
25744 5' -64.3 NC_005337.1 + 132049 0.66 0.519058
Target:  5'- gCGCGGUuccuGCGcGCGCUCgCGGCccggGCCGc -3'
miRNA:   3'- -GCGCCG----CGUcCGCGAG-GUCGa---CGGCc -5'
25744 5' -64.3 NC_005337.1 + 97070 0.66 0.519058
Target:  5'- gCGCGGCGCGcGGUGgUCUGcgugcccaaccGCaUGCUGGu -3'
miRNA:   3'- -GCGCCGCGU-CCGCgAGGU-----------CG-ACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 24392 0.66 0.519058
Target:  5'- aCGUGGCGgAcGUGCUcgaCCGGaagGCCGGg -3'
miRNA:   3'- -GCGCCGCgUcCGCGA---GGUCga-CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 97695 0.66 0.519058
Target:  5'- aCGCcGCGCuGGCGgaCCGGCUagGUgCGGa -3'
miRNA:   3'- -GCGcCGCGuCCGCgaGGUCGA--CG-GCC- -5'
25744 5' -64.3 NC_005337.1 + 90926 0.66 0.519058
Target:  5'- aGCGGCGUcuucccGGCGg-CCAGCgcGUCGGc -3'
miRNA:   3'- gCGCCGCGu-----CCGCgaGGUCGa-CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 91086 0.66 0.518124
Target:  5'- gCGCGGUGaccgugcucgggaUGGGCGUguaCCGGCUGaucaCGGa -3'
miRNA:   3'- -GCGCCGC-------------GUCCGCGa--GGUCGACg---GCC- -5'
25744 5' -64.3 NC_005337.1 + 30323 0.66 0.509745
Target:  5'- aCGCGgaggaGCGCAcGCGCUCgCGGUUGuuGa -3'
miRNA:   3'- -GCGC-----CGCGUcCGCGAG-GUCGACggCc -5'
25744 5' -64.3 NC_005337.1 + 18976 0.66 0.509745
Target:  5'- aGCGGCGCGuGUaCUCCuccgcgAGCUcggGCCGGu -3'
miRNA:   3'- gCGCCGCGUcCGcGAGG------UCGA---CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 91513 0.66 0.509745
Target:  5'- gGCGGCGUcgaagcGGGCGCgagaGGC-GUCGGu -3'
miRNA:   3'- gCGCCGCG------UCCGCGagg-UCGaCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.