Results 1 - 20 of 229 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25744 | 5' | -64.3 | NC_005337.1 | + | 24347 | 0.66 | 0.532206 |
Target: 5'- cCGCGGUGCAGuGCcugcuggaggaguuCUCCGcGCUGuguCCGGg -3' miRNA: 3'- -GCGCCGCGUC-CGc-------------GAGGU-CGAC---GGCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 44657 | 0.66 | 0.528437 |
Target: 5'- aGCgGGCGCuacguGGGCGaCUCCgagauaGGCgugGCCGa -3' miRNA: 3'- gCG-CCGCG-----UCCGC-GAGG------UCGa--CGGCc -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 111265 | 0.66 | 0.528437 |
Target: 5'- aCGCGGCGCAaGUGC-CgCAGCaUGCuCGc -3' miRNA: 3'- -GCGCCGCGUcCGCGaG-GUCG-ACG-GCc -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 86731 | 0.66 | 0.528437 |
Target: 5'- uCGCGGCauCAGGCccacgaggucccGCUCCGGCacgaugGCCa- -3' miRNA: 3'- -GCGCCGc-GUCCG------------CGAGGUCGa-----CGGcc -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 52476 | 0.66 | 0.527496 |
Target: 5'- cCGCGGCGCccGCGagagCCGGCUcaugcgcGCCa- -3' miRNA: 3'- -GCGCCGCGucCGCga--GGUCGA-------CGGcc -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 9638 | 0.66 | 0.527496 |
Target: 5'- gGUGGCGUaccucgucuccggAGGCGCgcaaugccUCCAGC-GCCa- -3' miRNA: 3'- gCGCCGCG-------------UCCGCG--------AGGUCGaCGGcc -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 105126 | 0.66 | 0.527496 |
Target: 5'- aCGCGGCGCuccggacGGcCGUcgCCGacaugguGCUGCUGGc -3' miRNA: 3'- -GCGCCGCGu------CC-GCGa-GGU-------CGACGGCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 25275 | 0.66 | 0.519058 |
Target: 5'- aCGCGGCGCuggaguucGCGCgcaCGGCgGgCGGg -3' miRNA: 3'- -GCGCCGCGuc------CGCGag-GUCGaCgGCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 113144 | 0.66 | 0.519058 |
Target: 5'- uGCGGUacgugcuguucGCGGuGCGCUgCguGGCgGCCGGc -3' miRNA: 3'- gCGCCG-----------CGUC-CGCGAgG--UCGaCGGCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 115432 | 0.66 | 0.519058 |
Target: 5'- uGCGGCGCGugcuGGCGauagagCCGGCguacgacgcGCUGGc -3' miRNA: 3'- gCGCCGCGU----CCGCga----GGUCGa--------CGGCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 122342 | 0.66 | 0.519058 |
Target: 5'- uCGaCGGCGC--GCGC-CCGGgUGCCGc -3' miRNA: 3'- -GC-GCCGCGucCGCGaGGUCgACGGCc -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 132049 | 0.66 | 0.519058 |
Target: 5'- gCGCGGUuccuGCGcGCGCUCgCGGCccggGCCGc -3' miRNA: 3'- -GCGCCG----CGUcCGCGAG-GUCGa---CGGCc -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 97070 | 0.66 | 0.519058 |
Target: 5'- gCGCGGCGCGcGGUGgUCUGcgugcccaaccGCaUGCUGGu -3' miRNA: 3'- -GCGCCGCGU-CCGCgAGGU-----------CG-ACGGCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 24392 | 0.66 | 0.519058 |
Target: 5'- aCGUGGCGgAcGUGCUcgaCCGGaagGCCGGg -3' miRNA: 3'- -GCGCCGCgUcCGCGA---GGUCga-CGGCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 97695 | 0.66 | 0.519058 |
Target: 5'- aCGCcGCGCuGGCGgaCCGGCUagGUgCGGa -3' miRNA: 3'- -GCGcCGCGuCCGCgaGGUCGA--CG-GCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 90926 | 0.66 | 0.519058 |
Target: 5'- aGCGGCGUcuucccGGCGg-CCAGCgcGUCGGc -3' miRNA: 3'- gCGCCGCGu-----CCGCgaGGUCGa-CGGCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 91086 | 0.66 | 0.518124 |
Target: 5'- gCGCGGUGaccgugcucgggaUGGGCGUguaCCGGCUGaucaCGGa -3' miRNA: 3'- -GCGCCGC-------------GUCCGCGa--GGUCGACg---GCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 30323 | 0.66 | 0.509745 |
Target: 5'- aCGCGgaggaGCGCAcGCGCUCgCGGUUGuuGa -3' miRNA: 3'- -GCGC-----CGCGUcCGCGAG-GUCGACggCc -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 18976 | 0.66 | 0.509745 |
Target: 5'- aGCGGCGCGuGUaCUCCuccgcgAGCUcggGCCGGu -3' miRNA: 3'- gCGCCGCGUcCGcGAGG------UCGA---CGGCC- -5' |
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25744 | 5' | -64.3 | NC_005337.1 | + | 91513 | 0.66 | 0.509745 |
Target: 5'- gGCGGCGUcgaagcGGGCGCgagaGGC-GUCGGu -3' miRNA: 3'- gCGCCGCG------UCCGCGagg-UCGaCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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