miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25745 3' -57.5 NC_005337.1 + 81731 0.66 0.871563
Target:  5'- uCGUUCAggcucuggcugucgcCGcCGGCGCCguucuccuGCGCGugCa -3'
miRNA:   3'- -GCAAGU---------------GCaGCCGUGGgu------CGCGCugG- -5'
25745 3' -57.5 NC_005337.1 + 122735 0.66 0.868659
Target:  5'- aCGUgccCGCGgacgaccugCGGcCACCCuGCGCuGCCc -3'
miRNA:   3'- -GCAa--GUGCa--------GCC-GUGGGuCGCGcUGG- -5'
25745 3' -57.5 NC_005337.1 + 74909 0.66 0.868659
Target:  5'- gCGUgauggCGCGgcuGGCGgCCuucgcgcGCGCGGCCg -3'
miRNA:   3'- -GCAa----GUGCag-CCGUgGGu------CGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 99274 0.66 0.868659
Target:  5'- gGUUCGgcaCGGCcgucuGCCUGGCGCGGCg -3'
miRNA:   3'- gCAAGUgcaGCCG-----UGGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 41201 0.66 0.868659
Target:  5'- cCGUggagAgGUCGGCGCUUAGCccGCgGACCu -3'
miRNA:   3'- -GCAag--UgCAGCCGUGGGUCG--CG-CUGG- -5'
25745 3' -57.5 NC_005337.1 + 58226 0.66 0.864243
Target:  5'- ---cCGCG-CGGCGgucauggagcgcaagUCCGGCGCGGCg -3'
miRNA:   3'- gcaaGUGCaGCCGU---------------GGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 98519 0.66 0.861259
Target:  5'- ---cCACGauccCGGUcgcGCCCAGCGCGuacgacACCa -3'
miRNA:   3'- gcaaGUGCa---GCCG---UGGGUCGCGC------UGG- -5'
25745 3' -57.5 NC_005337.1 + 12190 0.66 0.861259
Target:  5'- nCGagCugGUCGaGCACCgAGCGCu--- -3'
miRNA:   3'- -GCaaGugCAGC-CGUGGgUCGCGcugg -5'
25745 3' -57.5 NC_005337.1 + 46127 0.66 0.861259
Target:  5'- uCGUcCugGUcgggCGGCACCaggagaucgAGCGCGugCu -3'
miRNA:   3'- -GCAaGugCA----GCCGUGGg--------UCGCGCugG- -5'
25745 3' -57.5 NC_005337.1 + 49367 0.66 0.861259
Target:  5'- --aUCGCGgaggCGGCgaccgccgcaccGCCCccCGCGGCCg -3'
miRNA:   3'- gcaAGUGCa---GCCG------------UGGGucGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 58141 0.66 0.861259
Target:  5'- aCGUggACGgaUCGGCGgCCuucgcgcgcaAGCGCGugCg -3'
miRNA:   3'- -GCAagUGC--AGCCGUgGG----------UCGCGCugG- -5'
25745 3' -57.5 NC_005337.1 + 3497 0.66 0.861259
Target:  5'- ---gCACcggCGGCGCCCAggucuGCGCGAaguCCa -3'
miRNA:   3'- gcaaGUGca-GCCGUGGGU-----CGCGCU---GG- -5'
25745 3' -57.5 NC_005337.1 + 22706 0.66 0.860508
Target:  5'- gCGUUCAUGUC-GCACCUcgucuacGGCaccgcCGACCc -3'
miRNA:   3'- -GCAAGUGCAGcCGUGGG-------UCGc----GCUGG- -5'
25745 3' -57.5 NC_005337.1 + 23786 0.66 0.856722
Target:  5'- ---cCACGUCGaGCugGCCCGGUaccugcgccgcacggGCGACUa -3'
miRNA:   3'- gcaaGUGCAGC-CG--UGGGUCG---------------CGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 109960 0.66 0.855194
Target:  5'- uCGUUCACGcagguggugcuguucUCGaGCACCacgcccugcgugAGCGcCGGCCa -3'
miRNA:   3'- -GCAAGUGC---------------AGC-CGUGGg-----------UCGC-GCUGG- -5'
25745 3' -57.5 NC_005337.1 + 38681 0.66 0.853658
Target:  5'- ---gCGCGcugCuGCACCCGGC-CGACCc -3'
miRNA:   3'- gcaaGUGCa--GcCGUGGGUCGcGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 34052 0.66 0.853658
Target:  5'- gCGaUCACG-C-GCACgCGGCGcCGGCCg -3'
miRNA:   3'- -GCaAGUGCaGcCGUGgGUCGC-GCUGG- -5'
25745 3' -57.5 NC_005337.1 + 42593 0.66 0.853658
Target:  5'- cCGUgaagGCGUcgCGGCugCUAGCGCccGCCa -3'
miRNA:   3'- -GCAag--UGCA--GCCGugGGUCGCGc-UGG- -5'
25745 3' -57.5 NC_005337.1 + 90860 0.66 0.853658
Target:  5'- ----aGCGUCuccaGGa--CCAGCGCGGCCa -3'
miRNA:   3'- gcaagUGCAG----CCgugGGUCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 30013 0.66 0.853658
Target:  5'- uCGgUCuCGUCGGCgACgUA-CGCGACCg -3'
miRNA:   3'- -GCaAGuGCAGCCG-UGgGUcGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.