miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25750 5' -59.9 NC_005337.1 + 2680 0.66 0.752733
Target:  5'- gCCCGCaggacguccggagcuGCGGcGUgGGgACGCGGAgGAg -3'
miRNA:   3'- -GGGCG---------------CGCC-UAgUCgUGCGCCUgCUa -5'
25750 5' -59.9 NC_005337.1 + 86274 0.66 0.74897
Target:  5'- -gCGCGCGGAUCcaGGCcACGCagugcggccuGGACGc- -3'
miRNA:   3'- ggGCGCGCCUAG--UCG-UGCG----------CCUGCua -5'
25750 5' -59.9 NC_005337.1 + 104289 0.66 0.74897
Target:  5'- uUCGCGCGGG-CGGUccgcgaggGCGCGG-CGGc -3'
miRNA:   3'- gGGCGCGCCUaGUCG--------UGCGCCuGCUa -5'
25750 5' -59.9 NC_005337.1 + 84564 0.66 0.74897
Target:  5'- -aCGCGCGG--CAGCGCGUgaccgcgagGGugGAg -3'
miRNA:   3'- ggGCGCGCCuaGUCGUGCG---------CCugCUa -5'
25750 5' -59.9 NC_005337.1 + 28417 0.66 0.74897
Target:  5'- cCUCGuCGCGGAUggcCAGCgugaACGUGGACu-- -3'
miRNA:   3'- -GGGC-GCGCCUA---GUCG----UGCGCCUGcua -5'
25750 5' -59.9 NC_005337.1 + 87920 0.66 0.74897
Target:  5'- gCCUGCGcCGGcgCuucguGCACGCcGGCGGc -3'
miRNA:   3'- -GGGCGC-GCCuaGu----CGUGCGcCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 946 0.66 0.74897
Target:  5'- --aGCGCGGA-CAuGCugGCGGcgGCGGg -3'
miRNA:   3'- gggCGCGCCUaGU-CGugCGCC--UGCUa -5'
25750 5' -59.9 NC_005337.1 + 7826 0.66 0.74897
Target:  5'- cUCCGCGa----CAGCGCGCGGugGu- -3'
miRNA:   3'- -GGGCGCgccuaGUCGUGCGCCugCua -5'
25750 5' -59.9 NC_005337.1 + 37311 0.66 0.74897
Target:  5'- gCCGCGaGGAgcuggUC-GCGCGCGG-CGAg -3'
miRNA:   3'- gGGCGCgCCU-----AGuCGUGCGCCuGCUa -5'
25750 5' -59.9 NC_005337.1 + 66135 0.66 0.74897
Target:  5'- gCCCGCuaGGggC-GCGCGCGGccaccggccccGCGAc -3'
miRNA:   3'- -GGGCGcgCCuaGuCGUGCGCC-----------UGCUa -5'
25750 5' -59.9 NC_005337.1 + 946 0.66 0.74897
Target:  5'- --aGCGCGGA-CAuGCugGCGGcgGCGGg -3'
miRNA:   3'- gggCGCGCCUaGU-CGugCGCC--UGCUa -5'
25750 5' -59.9 NC_005337.1 + 130511 0.66 0.748026
Target:  5'- gCUCGUGgGaGGUCAuggaguuccugguGCGCGCGGGCGc- -3'
miRNA:   3'- -GGGCGCgC-CUAGU-------------CGUGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 61394 0.66 0.747082
Target:  5'- cUCCGuCGCGGAggcgugcacgucCAGCAgguuCGCGGACa-- -3'
miRNA:   3'- -GGGC-GCGCCUa-----------GUCGU----GCGCCUGcua -5'
25750 5' -59.9 NC_005337.1 + 132103 0.66 0.746137
Target:  5'- gCCGUGCGcGUCGGCgccguGCGCGGcaggcuccgcaacuGCGAg -3'
miRNA:   3'- gGGCGCGCcUAGUCG-----UGCGCC--------------UGCUa -5'
25750 5' -59.9 NC_005337.1 + 3691 0.66 0.739495
Target:  5'- gCCCGaCGCGGcuucuuguccUCGGCGCcaGgGGGCGAc -3'
miRNA:   3'- -GGGC-GCGCCu---------AGUCGUG--CgCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 877 0.66 0.739495
Target:  5'- gCCGgGCGGAagAGCGCGCcgagcaGGAgccCGAg -3'
miRNA:   3'- gGGCgCGCCUagUCGUGCG------CCU---GCUa -5'
25750 5' -59.9 NC_005337.1 + 13377 0.66 0.739495
Target:  5'- cUCCGgGaaucaGGGUgGGCACcguGCGGGCGGa -3'
miRNA:   3'- -GGGCgCg----CCUAgUCGUG---CGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 877 0.66 0.739495
Target:  5'- gCCGgGCGGAagAGCGCGCcgagcaGGAgccCGAg -3'
miRNA:   3'- gGGCgCGCCUagUCGUGCG------CCU---GCUa -5'
25750 5' -59.9 NC_005337.1 + 97681 0.66 0.739495
Target:  5'- gCCGCG-GGcgU-GCACGUGGugGAc -3'
miRNA:   3'- gGGCGCgCCuaGuCGUGCGCCugCUa -5'
25750 5' -59.9 NC_005337.1 + 38526 0.66 0.739495
Target:  5'- aUCGCGgGGAUCGuGCACgGCGGGa--- -3'
miRNA:   3'- gGGCGCgCCUAGU-CGUG-CGCCUgcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.