miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25750 5' -59.9 NC_005337.1 + 133706 0.75 0.254551
Target:  5'- uUCCGCGCGGccgCGGCguACGCGcGGCGGUg -3'
miRNA:   3'- -GGGCGCGCCua-GUCG--UGCGC-CUGCUA- -5'
25750 5' -59.9 NC_005337.1 + 133706 0.75 0.254551
Target:  5'- uUCCGCGCGGccgCGGCguACGCGcGGCGGUg -3'
miRNA:   3'- -GGGCGCGCCua-GUCG--UGCGC-CUGCUA- -5'
25750 5' -59.9 NC_005337.1 + 133555 0.66 0.729932
Target:  5'- gCCCGCGUaccccgCGGC-CGCGGGCGu- -3'
miRNA:   3'- -GGGCGCGccua--GUCGuGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 133555 0.66 0.729932
Target:  5'- gCCCGCGUaccccgCGGC-CGCGGGCGu- -3'
miRNA:   3'- -GGGCGCGccua--GUCGuGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 133426 0.69 0.570561
Target:  5'- gCCCGCGCuGcccgccgccuucGUCGagcccgggcccgcGCGCGCGGACGGc -3'
miRNA:   3'- -GGGCGCGcC------------UAGU-------------CGUGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 133426 0.69 0.570561
Target:  5'- gCCCGCGCuGcccgccgccuucGUCGagcccgggcccgcGCGCGCGGACGGc -3'
miRNA:   3'- -GGGCGCGcC------------UAGU-------------CGUGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 132408 0.67 0.641245
Target:  5'- gCCCGCGaucuucgaGGAgcucaUCAGC-CGCGGcuGCGAc -3'
miRNA:   3'- -GGGCGCg-------CCU-----AGUCGuGCGCC--UGCUa -5'
25750 5' -59.9 NC_005337.1 + 132103 0.66 0.746137
Target:  5'- gCCGUGCGcGUCGGCgccguGCGCGGcaggcuccgcaacuGCGAg -3'
miRNA:   3'- gGGCGCGCcUAGUCG-----UGCGCC--------------UGCUa -5'
25750 5' -59.9 NC_005337.1 + 132045 0.67 0.661205
Target:  5'- cCUCGCGCGGuUCcuGCGCGCGcucGCGGc -3'
miRNA:   3'- -GGGCGCGCCuAGu-CGUGCGCc--UGCUa -5'
25750 5' -59.9 NC_005337.1 + 130511 0.66 0.748026
Target:  5'- gCUCGUGgGaGGUCAuggaguuccugguGCGCGCGGGCGc- -3'
miRNA:   3'- -GGGCGCgC-CUAGU-------------CGUGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 130182 0.67 0.651232
Target:  5'- -gCGCGCGGA---GCACGCGGAg--- -3'
miRNA:   3'- ggGCGCGCCUaguCGUGCGCCUgcua -5'
25750 5' -59.9 NC_005337.1 + 130163 0.67 0.671155
Target:  5'- gUCCGCGCGucUCcgcGCGCGCGG-UGAg -3'
miRNA:   3'- -GGGCGCGCcuAGu--CGUGCGCCuGCUa -5'
25750 5' -59.9 NC_005337.1 + 129507 0.71 0.431005
Target:  5'- aCCCGCGCGucAUCGacgcgcugcucGCGCGCGGcGCGAg -3'
miRNA:   3'- -GGGCGCGCc-UAGU-----------CGUGCGCC-UGCUa -5'
25750 5' -59.9 NC_005337.1 + 128687 0.68 0.591353
Target:  5'- cCCCGC-CGGG-CAcGCGCGCuGGCGAc -3'
miRNA:   3'- -GGGCGcGCCUaGU-CGUGCGcCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 128470 0.66 0.720288
Target:  5'- aCCgGCGCGGGagaccgCGuGCuCGCGGGCGu- -3'
miRNA:   3'- -GGgCGCGCCUa-----GU-CGuGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 128249 0.68 0.631251
Target:  5'- gCCCGCgacaacucuggGCGGAcgccgCuGCACGCGG-CGGUc -3'
miRNA:   3'- -GGGCG-----------CGCCUa----GuCGUGCGCCuGCUA- -5'
25750 5' -59.9 NC_005337.1 + 127919 0.67 0.641245
Target:  5'- gCCgGUGCuGGGcaAGUACGCGGACGc- -3'
miRNA:   3'- -GGgCGCG-CCUagUCGUGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 127375 0.72 0.388755
Target:  5'- gCCgGCGCGGAcCcGCGCGCGcGCGAc -3'
miRNA:   3'- -GGgCGCGCCUaGuCGUGCGCcUGCUa -5'
25750 5' -59.9 NC_005337.1 + 127198 0.66 0.720288
Target:  5'- uCCCGUGCGaGAaCaagAGCAagGCGGugGAa -3'
miRNA:   3'- -GGGCGCGC-CUaG---UCGUg-CGCCugCUa -5'
25750 5' -59.9 NC_005337.1 + 127147 0.68 0.591353
Target:  5'- gUCCGCGUGcuGAUCcGCgcggGCGCGGACGu- -3'
miRNA:   3'- -GGGCGCGC--CUAGuCG----UGCGCCUGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.