miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25750 5' -59.9 NC_005337.1 + 25105 0.85 0.055926
Target:  5'- gCCCGCGCGGcgCGGCgcGCGCGGACGc- -3'
miRNA:   3'- -GGGCGCGCCuaGUCG--UGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 119871 0.72 0.396986
Target:  5'- gCgGCGCGGuUCAGCGCcgGCGGACu-- -3'
miRNA:   3'- gGgCGCGCCuAGUCGUG--CGCCUGcua -5'
25750 5' -59.9 NC_005337.1 + 119786 0.72 0.405328
Target:  5'- gCCGCGCGuGGUCGGUGCgGUGGugGCGAg -3'
miRNA:   3'- gGGCGCGC-CUAGUCGUG-CGCC--UGCUa -5'
25750 5' -59.9 NC_005337.1 + 37311 0.66 0.74897
Target:  5'- gCCGCGaGGAgcuggUC-GCGCGCGG-CGAg -3'
miRNA:   3'- gGGCGCgCCU-----AGuCGUGCGCCuGCUa -5'
25750 5' -59.9 NC_005337.1 + 57275 0.75 0.260558
Target:  5'- gCCGCGCGGGgcCGGCGCGCGcGGCu-- -3'
miRNA:   3'- gGGCGCGCCUa-GUCGUGCGC-CUGcua -5'
25750 5' -59.9 NC_005337.1 + 62958 0.74 0.292333
Target:  5'- gCCGCGCGGGUC-GC-CGCcGACGAg -3'
miRNA:   3'- gGGCGCGCCUAGuCGuGCGcCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 6241 0.74 0.29904
Target:  5'- cCCCGCGCGaGUCAGCGuCGCuGACGc- -3'
miRNA:   3'- -GGGCGCGCcUAGUCGU-GCGcCUGCua -5'
25750 5' -59.9 NC_005337.1 + 12603 0.74 0.312811
Target:  5'- gCCCGCGCGGAUgAGCAgGUccACGAc -3'
miRNA:   3'- -GGGCGCGCCUAgUCGUgCGccUGCUa -5'
25750 5' -59.9 NC_005337.1 + 77200 0.73 0.341777
Target:  5'- uCUCGCGCGuGAUCcGCACGCGcGAgGGg -3'
miRNA:   3'- -GGGCGCGC-CUAGuCGUGCGC-CUgCUa -5'
25750 5' -59.9 NC_005337.1 + 91359 0.72 0.396986
Target:  5'- -gCGCGCGGAgCAGCACGcCGGAgccgcgcuCGAa -3'
miRNA:   3'- ggGCGCGCCUaGUCGUGC-GCCU--------GCUa -5'
25750 5' -59.9 NC_005337.1 + 10603 0.73 0.341777
Target:  5'- uCCCGcCGCGGGggagCGGCgGCGCcaGGACGAc -3'
miRNA:   3'- -GGGC-GCGCCUa---GUCG-UGCG--CCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 720 0.73 0.334358
Target:  5'- gCCCGCggccGCGG---GGUACGCGGGCGAg -3'
miRNA:   3'- -GGGCG----CGCCuagUCGUGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 31498 0.82 0.091931
Target:  5'- aCCCGgGCGuGGUCAGCACGUGGAUGc- -3'
miRNA:   3'- -GGGCgCGC-CUAGUCGUGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 112410 0.72 0.364744
Target:  5'- gCCGUGCGGua-GGCcuggauCGCGGACGAg -3'
miRNA:   3'- gGGCGCGCCuagUCGu-----GCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 25444 0.76 0.21052
Target:  5'- gCCCGCGCGcuUCGGCAcCGUGGACGc- -3'
miRNA:   3'- -GGGCGCGCcuAGUCGU-GCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 89945 0.73 0.319162
Target:  5'- gCCGCGCGGAUaaaggcgcggccgCAGCACGCGcuCGGg -3'
miRNA:   3'- gGGCGCGCCUA-------------GUCGUGCGCcuGCUa -5'
25750 5' -59.9 NC_005337.1 + 127375 0.72 0.388755
Target:  5'- gCCgGCGCGGAcCcGCGCGCGcGCGAc -3'
miRNA:   3'- -GGgCGCGCCUaGuCGUGCGCcUGCUa -5'
25750 5' -59.9 NC_005337.1 + 4758 0.72 0.396986
Target:  5'- gCCGCGCGcGAgCAGCGCGUcGAUGAc -3'
miRNA:   3'- gGGCGCGC-CUaGUCGUGCGcCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 133706 0.75 0.254551
Target:  5'- uUCCGCGCGGccgCGGCguACGCGcGGCGGUg -3'
miRNA:   3'- -GGGCGCGCCua-GUCG--UGCGC-CUGCUA- -5'
25750 5' -59.9 NC_005337.1 + 75403 0.74 0.29904
Target:  5'- gCCGCGCGGAUgcugcggaCGGCGCGCGaGcgcGCGAa -3'
miRNA:   3'- gGGCGCGCCUA--------GUCGUGCGC-C---UGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.