miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 5' -51.4 NC_005337.1 + 38763 0.66 0.990039
Target:  5'- uGGCGAGCCGGuGCGcgguGGAGcccGACGcgCc -3'
miRNA:   3'- gCUGCUCGGUC-UGCu---UCUU---CUGCuaG- -5'
25797 5' -51.4 NC_005337.1 + 63355 0.66 0.990039
Target:  5'- uGGUGucGCC-GAaGAAGAAGACGAUCa -3'
miRNA:   3'- gCUGCu-CGGuCUgCUUCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 110380 0.66 0.990039
Target:  5'- gCGGC-AGCgaCAGGCGGAGGAGGCa--- -3'
miRNA:   3'- -GCUGcUCG--GUCUGCUUCUUCUGcuag -5'
25797 5' -51.4 NC_005337.1 + 59860 0.66 0.990039
Target:  5'- uCGAUGcGCCgguAGACGAAGcGGugGcgCu -3'
miRNA:   3'- -GCUGCuCGG---UCUGCUUCuUCugCuaG- -5'
25797 5' -51.4 NC_005337.1 + 116868 0.66 0.990039
Target:  5'- aGAUGuAGaagaaccaCCAGcCGAAGAGGACGAa- -3'
miRNA:   3'- gCUGC-UC--------GGUCuGCUUCUUCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 17696 0.66 0.990039
Target:  5'- uGGCGGGCaUGGGCGAGGucagcGAGcccACGGUCu -3'
miRNA:   3'- gCUGCUCG-GUCUGCUUC-----UUC---UGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 70488 0.66 0.98865
Target:  5'- gCGGCGGGauCCGGAUGuu---GGCGAUCa -3'
miRNA:   3'- -GCUGCUC--GGUCUGCuucuuCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 27172 0.66 0.98865
Target:  5'- gGACGuGCCuaaaaaGGACGAcgcgauAGggGAUGAa- -3'
miRNA:   3'- gCUGCuCGG------UCUGCU------UCuuCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 110430 0.66 0.98865
Target:  5'- aCGACGAGgCAGuCGAcGAAcGCGggCa -3'
miRNA:   3'- -GCUGCUCgGUCuGCUuCUUcUGCuaG- -5'
25797 5' -51.4 NC_005337.1 + 92385 0.66 0.98865
Target:  5'- aCGACGGaCUGGAgauCGAGGAGGugGAc- -3'
miRNA:   3'- -GCUGCUcGGUCU---GCUUCUUCugCUag -5'
25797 5' -51.4 NC_005337.1 + 3833 0.66 0.98865
Target:  5'- uCGACGAGCuCGGA--GGGAAGACu--- -3'
miRNA:   3'- -GCUGCUCG-GUCUgcUUCUUCUGcuag -5'
25797 5' -51.4 NC_005337.1 + 24203 0.66 0.98865
Target:  5'- cCGGCGAGgCGcGCGucGAGGugGAg- -3'
miRNA:   3'- -GCUGCUCgGUcUGCuuCUUCugCUag -5'
25797 5' -51.4 NC_005337.1 + 94053 0.66 0.988503
Target:  5'- cCGACGAcuucuccGCgCuGACGAAGAAGGUGGUg -3'
miRNA:   3'- -GCUGCU-------CG-GuCUGCUUCUUCUGCUAg -5'
25797 5' -51.4 NC_005337.1 + 19842 0.66 0.988205
Target:  5'- uCGAUGAGCCGGACGucguccuccgugauGuccauGAAGGgGAUg -3'
miRNA:   3'- -GCUGCUCGGUCUGC--------------Uu----CUUCUgCUAg -5'
25797 5' -51.4 NC_005337.1 + 120790 0.66 0.987115
Target:  5'- gGAUGcAGCUGGAgCGgcGcGAGACGGUCu -3'
miRNA:   3'- gCUGC-UCGGUCU-GCuuC-UUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 31055 0.66 0.987115
Target:  5'- gCGACGcauGuCCAGcACGAAGgcGuccACGAUCg -3'
miRNA:   3'- -GCUGCu--C-GGUC-UGCUUCuuC---UGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 82398 0.66 0.987115
Target:  5'- uCGGgGAGCCccgcGACGAacgAGAAGaACGAgUCa -3'
miRNA:   3'- -GCUgCUCGGu---CUGCU---UCUUC-UGCU-AG- -5'
25797 5' -51.4 NC_005337.1 + 115970 0.66 0.987115
Target:  5'- cCGuCGaAGCUccGACGAGGAGGAUGAc- -3'
miRNA:   3'- -GCuGC-UCGGu-CUGCUUCUUCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 68962 0.66 0.985426
Target:  5'- cCGGCGuGCCcuuccAGuCGcccgacuucagcAAGAAGACGAUCc -3'
miRNA:   3'- -GCUGCuCGG-----UCuGC------------UUCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 104273 0.66 0.985426
Target:  5'- cCGACGAGaCCGagcugcccuacGACGAGGAcGG-GAUCa -3'
miRNA:   3'- -GCUGCUC-GGU-----------CUGCUUCUuCUgCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.