miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 3' -55 NC_005337.1 + 10721 0.8 0.245112
Target:  5'- -gUCCACGGCCauguggucaggGCGGUGGGAC-GUGCa -3'
miRNA:   3'- gaAGGUGCCGG-----------UGCUACUCUGcCACG- -5'
25877 3' -55 NC_005337.1 + 83390 0.7 0.740768
Target:  5'- -gUUC-CGGCgCACGuUGuAGGCGGUGCu -3'
miRNA:   3'- gaAGGuGCCG-GUGCuAC-UCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 90601 0.7 0.750523
Target:  5'- -gUCCGCccgGGCCACGAUuuccCGGUGCc -3'
miRNA:   3'- gaAGGUG---CCGGUGCUAcucuGCCACG- -5'
25877 3' -55 NC_005337.1 + 62402 0.65 0.939004
Target:  5'- -gUCCACGGUCGCa---AGcUGGUGCg -3'
miRNA:   3'- gaAGGUGCCGGUGcuacUCuGCCACG- -5'
25877 3' -55 NC_005337.1 + 133704 0.73 0.608565
Target:  5'- gCUUCCgcGCGGCCGCGgcGuacgcgcGGCGGUGg -3'
miRNA:   3'- -GAAGG--UGCCGGUGCuaCu------CUGCCACg -5'
25877 3' -55 NC_005337.1 + 33063 0.72 0.629162
Target:  5'- -cUCCGCGaccuCCGCGAaGcAGGCGGUGCc -3'
miRNA:   3'- gaAGGUGCc---GGUGCUaC-UCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 721 0.72 0.639468
Target:  5'- --cCCGCGGCCGCGggGuacGCGG-GCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaCuc-UGCCaCG- -5'
25877 3' -55 NC_005337.1 + 12078 0.72 0.649768
Target:  5'- -gUCCGCGcccGCgGCGAUGAGGCGcGgGCa -3'
miRNA:   3'- gaAGGUGC---CGgUGCUACUCUGC-CaCG- -5'
25877 3' -55 NC_005337.1 + 88213 0.71 0.680548
Target:  5'- -aUCCcCGGCCuccuCGAgGAGGCGG-GCu -3'
miRNA:   3'- gaAGGuGCCGGu---GCUaCUCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 109759 0.7 0.739787
Target:  5'- -gUCCGCGaggucguCCGCGGUGGGACGaccucgcGUGCg -3'
miRNA:   3'- gaAGGUGCc------GGUGCUACUCUGC-------CACG- -5'
25877 3' -55 NC_005337.1 + 91798 0.71 0.720979
Target:  5'- -cUCCACGGCgGCGGcgGuGGCGG-GUa -3'
miRNA:   3'- gaAGGUGCCGgUGCUa-CuCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 35512 0.71 0.680548
Target:  5'- -gUCCACGGCgCugcCGGUGAcGA-GGUGCa -3'
miRNA:   3'- gaAGGUGCCG-Gu--GCUACU-CUgCCACG- -5'
25877 3' -55 NC_005337.1 + 36673 0.75 0.450696
Target:  5'- --gCCGCGGCCaccguguccACGAUGAGcuuguucCGGUGCa -3'
miRNA:   3'- gaaGGUGCCGG---------UGCUACUCu------GCCACG- -5'
25877 3' -55 NC_005337.1 + 105202 0.7 0.730917
Target:  5'- -gUCCGCGGCCugGGggccgcUGAGcugcgcgcucGCGG-GCg -3'
miRNA:   3'- gaAGGUGCCGGugCU------ACUC----------UGCCaCG- -5'
25877 3' -55 NC_005337.1 + 36293 0.75 0.478806
Target:  5'- ---aCGCGGCCACGGUGucgcGGAUGGcGCg -3'
miRNA:   3'- gaagGUGCCGGUGCUAC----UCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 83996 0.72 0.660053
Target:  5'- -cUCCAUGGCgGaCGAgGAGGCGGggUGCu -3'
miRNA:   3'- gaAGGUGCCGgU-GCUaCUCUGCC--ACG- -5'
25877 3' -55 NC_005337.1 + 57533 0.7 0.736839
Target:  5'- uCUUCCugGGCCugGAccgcaugcacgggcUgcugcucuuccacGAGACGG-GCg -3'
miRNA:   3'- -GAAGGugCCGGugCU--------------A-------------CUCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 68206 0.7 0.750523
Target:  5'- --gCCGCGGCCGCGuccgcGAuGCGGUcGCu -3'
miRNA:   3'- gaaGGUGCCGGUGCua---CUcUGCCA-CG- -5'
25877 3' -55 NC_005337.1 + 97789 0.75 0.488366
Target:  5'- --gCCGCGGCCGCGGccAGGCcGUGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCUacUCUGcCACG- -5'
25877 3' -55 NC_005337.1 + 33409 0.72 0.639468
Target:  5'- -cUCUgGCGGCCGCcGUG-GAUGGUGCg -3'
miRNA:   3'- gaAGG-UGCCGGUGcUACuCUGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.