miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 5' -52.6 NC_005337.1 + 23638 0.66 0.954824
Target:  5'- -gCUUCGCgGUGCugccCGAGCGCGaGUAc -3'
miRNA:   3'- aaGAAGCG-CGCGuu--GUUCGCGUaCAU- -5'
25897 5' -52.6 NC_005337.1 + 29535 0.66 0.954824
Target:  5'- gUCUUCGCGCGgCGGCc-GUGCAc--- -3'
miRNA:   3'- aAGAAGCGCGC-GUUGuuCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 115365 0.66 0.954824
Target:  5'- ----aCGCGCucaagcccGCGACGcuccAGCGCGUGUAc -3'
miRNA:   3'- aagaaGCGCG--------CGUUGU----UCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 97659 0.66 0.954824
Target:  5'- cUCggUCGCGCGCGcgcuccaggccGCGGGCGUgcacGUGg- -3'
miRNA:   3'- aAGa-AGCGCGCGU-----------UGUUCGCG----UACau -5'
25897 5' -52.6 NC_005337.1 + 91519 0.66 0.954824
Target:  5'- gUCgaagCGgGCGCGAgAGGCGUcgGUc -3'
miRNA:   3'- aAGaa--GCgCGCGUUgUUCGCGuaCAu -5'
25897 5' -52.6 NC_005337.1 + 84747 0.66 0.954824
Target:  5'- gUCUcccgcgCGCGCGCGAUGGuGUGCuUGUAg -3'
miRNA:   3'- aAGAa-----GCGCGCGUUGUU-CGCGuACAU- -5'
25897 5' -52.6 NC_005337.1 + 4468 0.66 0.954824
Target:  5'- ---aUCGaCGCGCGGCAGGUGCu---- -3'
miRNA:   3'- aagaAGC-GCGCGUUGUUCGCGuacau -5'
25897 5' -52.6 NC_005337.1 + 25288 0.66 0.954824
Target:  5'- --gUUCGCGCGCAcgGCGGGCGg----- -3'
miRNA:   3'- aagAAGCGCGCGU--UGUUCGCguacau -5'
25897 5' -52.6 NC_005337.1 + 13814 0.66 0.950564
Target:  5'- aUCcagCGCGCGCu-CGAGCGCGc--- -3'
miRNA:   3'- aAGaa-GCGCGCGuuGUUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 72792 0.66 0.950564
Target:  5'- aUCaaCGCGCGCcggcaggaguACGAGCGCcgGUu -3'
miRNA:   3'- aAGaaGCGCGCGu---------UGUUCGCGuaCAu -5'
25897 5' -52.6 NC_005337.1 + 68667 0.66 0.950564
Target:  5'- gUUgagCGCGUGCAGCAGcGCGCucuUGg- -3'
miRNA:   3'- aAGaa-GCGCGCGUUGUU-CGCGu--ACau -5'
25897 5' -52.6 NC_005337.1 + 124103 0.66 0.950564
Target:  5'- gUCUUCGCGCucgcCGGCAAGgGC-UGg- -3'
miRNA:   3'- aAGAAGCGCGc---GUUGUUCgCGuACau -5'
25897 5' -52.6 NC_005337.1 + 29606 0.66 0.950564
Target:  5'- gUCUUgCGCcCGCGGC-AGCGCAcgGUGg -3'
miRNA:   3'- aAGAA-GCGcGCGUUGuUCGCGUa-CAU- -5'
25897 5' -52.6 NC_005337.1 + 85883 0.66 0.941263
Target:  5'- gUCUcCGUGCGCGGCucgaAGGCGCGg--- -3'
miRNA:   3'- aAGAaGCGCGCGUUG----UUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 39652 0.66 0.936214
Target:  5'- -gCggCGCGgcCGCGugGGGCGCGUGg- -3'
miRNA:   3'- aaGaaGCGC--GCGUugUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 2094 0.66 0.936214
Target:  5'- gUCggCGCGCGCcGCGAGCccggucaggcacGCGUGc- -3'
miRNA:   3'- aAGaaGCGCGCGuUGUUCG------------CGUACau -5'
25897 5' -52.6 NC_005337.1 + 70715 0.66 0.936214
Target:  5'- ----cCGCGC-CAAgGAGUGCGUGUGc -3'
miRNA:   3'- aagaaGCGCGcGUUgUUCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 75244 0.67 0.930897
Target:  5'- gUCUUCGCGUccacCAGCGGGCGCc---- -3'
miRNA:   3'- aAGAAGCGCGc---GUUGUUCGCGuacau -5'
25897 5' -52.6 NC_005337.1 + 14522 0.67 0.925312
Target:  5'- aUCUugcUCGCGUGCuGCuGGCGCAccaUGUc -3'
miRNA:   3'- aAGA---AGCGCGCGuUGuUCGCGU---ACAu -5'
25897 5' -52.6 NC_005337.1 + 100755 0.67 0.925312
Target:  5'- ----aCGCGUGCAGCcGGCGCAc--- -3'
miRNA:   3'- aagaaGCGCGCGUUGuUCGCGUacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.