miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 5' -54.9 NC_005337.1 + 53933 0.66 0.919384
Target:  5'- uGCGGCcaUCGGGGaguucuGCUCGCGCcUGuGCc -3'
miRNA:   3'- -CGUCGa-AGUCCU------CGAGCGCGcACuUG- -5'
25902 5' -54.9 NC_005337.1 + 54083 0.66 0.919384
Target:  5'- uCAGCgcccgcggCAGGAGCgcgucCGCGCGccGGCa -3'
miRNA:   3'- cGUCGaa------GUCCUCGa----GCGCGCacUUG- -5'
25902 5' -54.9 NC_005337.1 + 26401 0.66 0.913478
Target:  5'- uGCGGCagCAGGuacguGCUCGCgGCGgccGCg -3'
miRNA:   3'- -CGUCGaaGUCCu----CGAGCG-CGCacuUG- -5'
25902 5' -54.9 NC_005337.1 + 70494 0.66 0.909815
Target:  5'- aGCAGCg--AGGAgucgcugaucaccaaGCUCGUGC-UGGACg -3'
miRNA:   3'- -CGUCGaagUCCU---------------CGAGCGCGcACUUG- -5'
25902 5' -54.9 NC_005337.1 + 809 0.66 0.907324
Target:  5'- cCAGCUcCGcGGAGCcguccgCGCGCGcGGGCc -3'
miRNA:   3'- cGUCGAaGU-CCUCGa-----GCGCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 128028 0.66 0.907324
Target:  5'- cCAGCgUCAGcGAcGCugacUCGCGCGgGGACa -3'
miRNA:   3'- cGUCGaAGUC-CU-CG----AGCGCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 809 0.66 0.907324
Target:  5'- cCAGCUcCGcGGAGCcguccgCGCGCGcGGGCc -3'
miRNA:   3'- cGUCGAaGU-CCUCGa-----GCGCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 130162 0.66 0.907324
Target:  5'- cGCGcGCUUUcGGAgGCcgugCGCGCG-GAGCa -3'
miRNA:   3'- -CGU-CGAAGuCCU-CGa---GCGCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 9648 0.66 0.900923
Target:  5'- cGCGauGCUg-AGcAGCcCGCGCGUGAGCu -3'
miRNA:   3'- -CGU--CGAagUCcUCGaGCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 49248 0.66 0.900923
Target:  5'- aCAuGC-UUAGGcAGCUaguccucgaGCGCGUGAACg -3'
miRNA:   3'- cGU-CGaAGUCC-UCGAg--------CGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 105805 0.66 0.900923
Target:  5'- cGCAuccguGCUcCAGGAGCUCGacaaguacauCGuCGUGAAg -3'
miRNA:   3'- -CGU-----CGAaGUCCUCGAGC----------GC-GCACUUg -5'
25902 5' -54.9 NC_005337.1 + 101556 0.66 0.900923
Target:  5'- cGUGGaCUUCcucaAGGAGCU-GCuCGUGAGCg -3'
miRNA:   3'- -CGUC-GAAG----UCCUCGAgCGcGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 10390 0.66 0.894278
Target:  5'- cGCAGCU---GGuGCUCGgGCuGUGGAg -3'
miRNA:   3'- -CGUCGAaguCCuCGAGCgCG-CACUUg -5'
25902 5' -54.9 NC_005337.1 + 38877 0.66 0.894278
Target:  5'- cGCGGUUcugcUC-GGAGUUCGCGCGcGucGCg -3'
miRNA:   3'- -CGUCGA----AGuCCUCGAGCGCGCaCu-UG- -5'
25902 5' -54.9 NC_005337.1 + 37308 0.66 0.894278
Target:  5'- cCGGCcgCgAGGAGCuggUCGCGCGcggcGAGCa -3'
miRNA:   3'- cGUCGaaG-UCCUCG---AGCGCGCa---CUUG- -5'
25902 5' -54.9 NC_005337.1 + 99313 0.67 0.890176
Target:  5'- cGCAGCgcCGGGucgucgacuGCUCGCagcgcugcuucaugcGCGUGAAg -3'
miRNA:   3'- -CGUCGaaGUCCu--------CGAGCG---------------CGCACUUg -5'
25902 5' -54.9 NC_005337.1 + 46139 0.67 0.887394
Target:  5'- gGCGGCacCAGGAGaucgaGCGCGUGcuCu -3'
miRNA:   3'- -CGUCGaaGUCCUCgag--CGCGCACuuG- -5'
25902 5' -54.9 NC_005337.1 + 10700 0.67 0.887394
Target:  5'- gGCGGC--CAGGAGCUCGgGCu----- -3'
miRNA:   3'- -CGUCGaaGUCCUCGAGCgCGcacuug -5'
25902 5' -54.9 NC_005337.1 + 81102 0.67 0.887394
Target:  5'- aGCAGCcgCcGGAGCacgUUGCGCagGUGGAUg -3'
miRNA:   3'- -CGUCGaaGuCCUCG---AGCGCG--CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 673 0.67 0.887394
Target:  5'- uGCAGCagCAGcGGGCccuugCGCGCG-GAGg -3'
miRNA:   3'- -CGUCGaaGUC-CUCGa----GCGCGCaCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.