miRNA display CGI


Results 1 - 20 of 346 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 3' -58.9 NC_005337.1 + 133690 0.69 0.613762
Target:  5'- gGCGUu--CG-CCgGCGGcUUCCGCGCGg -3'
miRNA:   3'- -CGCGuguGCaGGgCGUC-AAGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 133690 0.69 0.613762
Target:  5'- gGCGUu--CG-CCgGCGGcUUCCGCGCGg -3'
miRNA:   3'- -CGCGuguGCaGGgCGUC-AAGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 133558 0.68 0.64382
Target:  5'- cGCGUACcccGCGg-CCGCGGgcgUgCGCGCGa -3'
miRNA:   3'- -CGCGUG---UGCagGGCGUCa--AgGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 133558 0.68 0.64382
Target:  5'- cGCGUACcccGCGg-CCGCGGgcgUgCGCGCGa -3'
miRNA:   3'- -CGCGUG---UGCagGGCGUCa--AgGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 133508 0.72 0.450451
Target:  5'- gGCGCGCAgcacauggccgcCGUCgaggCCGCGGgcgCCGCGCu -3'
miRNA:   3'- -CGCGUGU------------GCAG----GGCGUCaa-GGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 133508 0.72 0.450451
Target:  5'- gGCGCGCAgcacauggccgcCGUCgaggCCGCGGgcgCCGCGCu -3'
miRNA:   3'- -CGCGUGU------------GCAG----GGCGUCaa-GGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 133201 0.68 0.663827
Target:  5'- aGCcCGCucCGUCCCGCAG-UCCGCc-- -3'
miRNA:   3'- -CGcGUGu-GCAGGGCGUCaAGGCGcgc -5'
25914 3' -58.9 NC_005337.1 + 133201 0.68 0.663827
Target:  5'- aGCcCGCucCGUCCCGCAG-UCCGCc-- -3'
miRNA:   3'- -CGcGUGu-GCAGGGCGUCaAGGCGcgc -5'
25914 3' -58.9 NC_005337.1 + 133153 0.66 0.806101
Target:  5'- uCGCGCGCGUgCUGCGGcugcucCCG-GCGg -3'
miRNA:   3'- cGCGUGUGCAgGGCGUCaa----GGCgCGC- -5'
25914 3' -58.9 NC_005337.1 + 133131 0.68 0.673797
Target:  5'- gGCGCGCuc--CCCGCGGagcuggUCgCGCGCGu -3'
miRNA:   3'- -CGCGUGugcaGGGCGUCa-----AG-GCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 133084 0.68 0.683735
Target:  5'- uGCGCGCcCGUgCCGCGc--UCGCGCa -3'
miRNA:   3'- -CGCGUGuGCAgGGCGUcaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 133068 0.69 0.61076
Target:  5'- cGCGUACGCGgcgCCgguggccgccuggaUGCAGgagaUCCGUGCGc -3'
miRNA:   3'- -CGCGUGUGCa--GG--------------GCGUCa---AGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 132058 0.7 0.534668
Target:  5'- cUGCGCGCG-CUCGCGGcccgggCCGCGCc -3'
miRNA:   3'- cGCGUGUGCaGGGCGUCaa----GGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 131899 0.68 0.691656
Target:  5'- gGCGCGCACGUggaCGCGGUcgaccggugcugCgGCGCGc -3'
miRNA:   3'- -CGCGUGUGCAgg-GCGUCAa-----------GgCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 131421 0.74 0.349842
Target:  5'- gGCGCGCGgcuccgcggacucCGUCuCCGCGGaggCCGCGCu -3'
miRNA:   3'- -CGCGUGU-------------GCAG-GGCGUCaa-GGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 131372 0.69 0.599764
Target:  5'- aGCGCGCGCGguacgucuucgaCCGCGGggCCGUGa- -3'
miRNA:   3'- -CGCGUGUGCag----------GGCGUCaaGGCGCgc -5'
25914 3' -58.9 NC_005337.1 + 131264 0.67 0.722994
Target:  5'- cGCGCACGCGcUgCCGgAGcccgUCCGCcagucgcagGCGg -3'
miRNA:   3'- -CGCGUGUGC-AgGGCgUCa---AGGCG---------CGC- -5'
25914 3' -58.9 NC_005337.1 + 130148 0.66 0.806101
Target:  5'- cGCGCGCugGcgCUCGCgcgcuuucggAGgccgUgCGCGCGg -3'
miRNA:   3'- -CGCGUGugCa-GGGCG----------UCa---AgGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 130023 0.68 0.693632
Target:  5'- --uCACGCGg-CCGCGGUcgCCGCGCu -3'
miRNA:   3'- cgcGUGUGCagGGCGUCAa-GGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 129562 0.67 0.722025
Target:  5'- cGCGUACgagAUGUCCCcccuggccgugcuGCucaagUCCGCGCGa -3'
miRNA:   3'- -CGCGUG---UGCAGGG-------------CGuca--AGGCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.