miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 3' -56 NC_005337.1 + 25115 0.66 0.882697
Target:  5'- cGCGGCGCGCGCGgacgcGUGaaUAUUCGGc- -3'
miRNA:   3'- uUGCCGUGUGUGCa----CAC--GUAGGCCac -5'
25924 3' -56 NC_005337.1 + 69230 0.66 0.875464
Target:  5'- gAACGuGCGCGCGCGccUG-GaCGUgCCGGUGa -3'
miRNA:   3'- -UUGC-CGUGUGUGC--ACaC-GUA-GGCCAC- -5'
25924 3' -56 NC_005337.1 + 128712 0.66 0.875464
Target:  5'- cGCGGCugGCGCGcGUGUAccgcgagccgcUCUGGa- -3'
miRNA:   3'- uUGCCGugUGUGCaCACGU-----------AGGCCac -5'
25924 3' -56 NC_005337.1 + 104558 0.66 0.874729
Target:  5'- cACcGCGCGCGCGUGcGCGccucgcgcguccgUCCGGUc -3'
miRNA:   3'- uUGcCGUGUGUGCACaCGU-------------AGGCCAc -5'
25924 3' -56 NC_005337.1 + 102756 0.66 0.868007
Target:  5'- cGCGGCACcuGCAcCGUGaGCAUCCacGUGc -3'
miRNA:   3'- uUGCCGUG--UGU-GCACaCGUAGGc-CAC- -5'
25924 3' -56 NC_005337.1 + 17347 0.66 0.868007
Target:  5'- uACGGCACGCGCagcagcaccGUcUGCcgcCCGGUGa -3'
miRNA:   3'- uUGCCGUGUGUG---------CAcACGua-GGCCAC- -5'
25924 3' -56 NC_005337.1 + 8879 0.66 0.868007
Target:  5'- uGACGGCACGCAgCGUGUcggGCGUuaCCGu-- -3'
miRNA:   3'- -UUGCCGUGUGU-GCACA---CGUA--GGCcac -5'
25924 3' -56 NC_005337.1 + 70354 0.66 0.868007
Target:  5'- cACGGCGgugcgccgcCGCACGUGgucGCGUCCGu-- -3'
miRNA:   3'- uUGCCGU---------GUGUGCACa--CGUAGGCcac -5'
25924 3' -56 NC_005337.1 + 2352 0.66 0.868007
Target:  5'- cGCGGCGCACgauccGCGccagGUGCucuAUCgGGUGc -3'
miRNA:   3'- uUGCCGUGUG-----UGCa---CACG---UAGgCCAC- -5'
25924 3' -56 NC_005337.1 + 3107 0.66 0.868007
Target:  5'- -cCGcGCGCAUcagcagcagcaGCGUGUGCAgcacgcgCCGGUa -3'
miRNA:   3'- uuGC-CGUGUG-----------UGCACACGUa------GGCCAc -5'
25924 3' -56 NC_005337.1 + 88761 0.66 0.867249
Target:  5'- cGCGGCgccgACACcgACGUggaggccuucgacGUGCGUCCGGa- -3'
miRNA:   3'- uUGCCG----UGUG--UGCA-------------CACGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 54139 0.66 0.860329
Target:  5'- uACGGgaGC-CGCGUGUcGCGcCCGGUGu -3'
miRNA:   3'- uUGCCg-UGuGUGCACA-CGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 50765 0.66 0.852438
Target:  5'- --gGGCGCACGCGUGcGguUCCcgcGGUc -3'
miRNA:   3'- uugCCGUGUGUGCACaCguAGG---CCAc -5'
25924 3' -56 NC_005337.1 + 113160 0.66 0.852438
Target:  5'- cGCGGUGCGCuGCGUG-GCggCCGGc- -3'
miRNA:   3'- uUGCCGUGUG-UGCACaCGuaGGCCac -5'
25924 3' -56 NC_005337.1 + 48887 0.66 0.852438
Target:  5'- gAGCGcCGCGCACGgcuccaGUGCAUCuCGGa- -3'
miRNA:   3'- -UUGCcGUGUGUGCa-----CACGUAG-GCCac -5'
25924 3' -56 NC_005337.1 + 39650 0.66 0.852438
Target:  5'- cAGCGGCGCGgcCGCGUGgggcGCGUggccCCGGg- -3'
miRNA:   3'- -UUGCCGUGU--GUGCACa---CGUA----GGCCac -5'
25924 3' -56 NC_005337.1 + 76843 0.66 0.844341
Target:  5'- cGCaGCGCACGCGguagaUGgacggGCGUCCGGa- -3'
miRNA:   3'- uUGcCGUGUGUGC-----ACa----CGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 28254 0.66 0.844341
Target:  5'- cGCGGCACcacgcGCACGUGcgugGUGUCC-GUGa -3'
miRNA:   3'- uUGCCGUG-----UGUGCACa---CGUAGGcCAC- -5'
25924 3' -56 NC_005337.1 + 2623 0.67 0.827554
Target:  5'- cGCGGCGCGCACGg--GC-UCCucgaagcggaaGGUGg -3'
miRNA:   3'- uUGCCGUGUGUGCacaCGuAGG-----------CCAC- -5'
25924 3' -56 NC_005337.1 + 18775 0.67 0.824971
Target:  5'- cGAgGGCGCACcugACGUccacggccccgugcGUGCA-CCGGUGc -3'
miRNA:   3'- -UUgCCGUGUG---UGCA--------------CACGUaGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.