miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 5' -58.8 NC_005337.1 + 26399 0.66 0.781604
Target:  5'- gUCGuuGGUGUUCGgCGUgccgauguacuggugGCGUGGAUc -3'
miRNA:   3'- gAGCggCCACGAGU-GCG---------------CGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 61552 0.66 0.777927
Target:  5'- -aCGCCGuUGCUgAUGCGCAgguUGGGgUa -3'
miRNA:   3'- gaGCGGCcACGAgUGCGCGU---ACCUgA- -5'
25924 5' -58.8 NC_005337.1 + 75013 0.66 0.777927
Target:  5'- --gGCCGccGCUgACGCGCAccgugGGGCUg -3'
miRNA:   3'- gagCGGCcaCGAgUGCGCGUa----CCUGA- -5'
25924 5' -58.8 NC_005337.1 + 132633 0.66 0.768646
Target:  5'- gCUCGUCGccGCgggCGCGCGCAUcGACc -3'
miRNA:   3'- -GAGCGGCcaCGa--GUGCGCGUAcCUGa -5'
25924 5' -58.8 NC_005337.1 + 89320 0.66 0.768646
Target:  5'- --aGCCGGUGCUCGCagaaGUGCAuaaacaggUGGcGCa -3'
miRNA:   3'- gagCGGCCACGAGUG----CGCGU--------ACC-UGa -5'
25924 5' -58.8 NC_005337.1 + 110337 0.66 0.768646
Target:  5'- --gGCCGGgcgGCgUCGCGCGCGccugccgcGGGCg -3'
miRNA:   3'- gagCGGCCa--CG-AGUGCGCGUa-------CCUGa -5'
25924 5' -58.8 NC_005337.1 + 65531 0.66 0.768646
Target:  5'- --gGCCGGUGCUggaggcgcacugUGCGCaGCAcGGGCg -3'
miRNA:   3'- gagCGGCCACGA------------GUGCG-CGUaCCUGa -5'
25924 5' -58.8 NC_005337.1 + 97871 0.66 0.768646
Target:  5'- -cCGCCGccGUGCUCAacCGCAUGGuCa -3'
miRNA:   3'- gaGCGGC--CACGAGUgcGCGUACCuGa -5'
25924 5' -58.8 NC_005337.1 + 103242 0.66 0.768646
Target:  5'- -cCGCUGGUGCgcgCcCGCGCgGUGGcccACUa -3'
miRNA:   3'- gaGCGGCCACGa--GuGCGCG-UACC---UGA- -5'
25924 5' -58.8 NC_005337.1 + 38336 0.66 0.759246
Target:  5'- -gCGCCGGgcgaguacgcgcUGCgcaUCACGCacacgacggGCGUGGACa -3'
miRNA:   3'- gaGCGGCC------------ACG---AGUGCG---------CGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 48637 0.66 0.759246
Target:  5'- gCUCGgCGGacGCcaGCGCGCAgcUGGACg -3'
miRNA:   3'- -GAGCgGCCa-CGagUGCGCGU--ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 2928 0.66 0.759246
Target:  5'- gUCGCCGGagUGCcgACGCGCAcGGcGCg -3'
miRNA:   3'- gAGCGGCC--ACGagUGCGCGUaCC-UGa -5'
25924 5' -58.8 NC_005337.1 + 66623 0.66 0.749735
Target:  5'- aCUCGgUGGUGCUggagCACGCGCGc-GACc -3'
miRNA:   3'- -GAGCgGCCACGA----GUGCGCGUacCUGa -5'
25924 5' -58.8 NC_005337.1 + 28299 0.66 0.749735
Target:  5'- -aCGCCGGUGaccuccucgUCGCGCGCGUcguccaGGAa- -3'
miRNA:   3'- gaGCGGCCACg--------AGUGCGCGUA------CCUga -5'
25924 5' -58.8 NC_005337.1 + 66100 0.66 0.740122
Target:  5'- -gCGCU-GUGCggcgucugCGCGCGCGUGGAg- -3'
miRNA:   3'- gaGCGGcCACGa-------GUGCGCGUACCUga -5'
25924 5' -58.8 NC_005337.1 + 14849 0.66 0.740122
Target:  5'- -cCGCCgagcGGUGCUgGCGCGac-GGGCg -3'
miRNA:   3'- gaGCGG----CCACGAgUGCGCguaCCUGa -5'
25924 5' -58.8 NC_005337.1 + 98721 0.66 0.740122
Target:  5'- gCUCGCgCGGcGCccugCGCGUGCugaccgucAUGGACUu -3'
miRNA:   3'- -GAGCG-GCCaCGa---GUGCGCG--------UACCUGA- -5'
25924 5' -58.8 NC_005337.1 + 131917 0.66 0.740122
Target:  5'- gUCGaCCGGUGCUgcgGCGCGC-UGGcCc -3'
miRNA:   3'- gAGC-GGCCACGAg--UGCGCGuACCuGa -5'
25924 5' -58.8 NC_005337.1 + 56129 0.67 0.730417
Target:  5'- aUCGCCaGcGUGCgcgGCGUGCAgcgGGGCg -3'
miRNA:   3'- gAGCGG-C-CACGag-UGCGCGUa--CCUGa -5'
25924 5' -58.8 NC_005337.1 + 101009 0.67 0.730417
Target:  5'- gCUCGCgGGc-CUCugGaugGCGUGGACUc -3'
miRNA:   3'- -GAGCGgCCacGAGugCg--CGUACCUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.