miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 3' -53.2 NC_005337.1 + 77136 0.66 0.970887
Target:  5'- gGCGUGcCGCCGC-CGA---GCagCGCg -3'
miRNA:   3'- gCGCAC-GUGGCGuGCUacaUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 76352 0.66 0.970887
Target:  5'- aGCuUGCcguugACCaGCGgGAUGUuCUUCGCg -3'
miRNA:   3'- gCGcACG-----UGG-CGUgCUACAuGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 103545 0.66 0.970887
Target:  5'- aGCGcGCGCUGUACGAcuucUGcgACUUCccgGCg -3'
miRNA:   3'- gCGCaCGUGGCGUGCU----ACa-UGAAG---CG- -5'
25951 3' -53.2 NC_005337.1 + 99539 0.66 0.970887
Target:  5'- cCG-GUGCGCCGC-CGAc-UGCU-CGCg -3'
miRNA:   3'- -GCgCACGUGGCGuGCUacAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 2788 0.66 0.970887
Target:  5'- gCGCGgaccgGUGCCGCAUG-UGcACUagGCg -3'
miRNA:   3'- -GCGCa----CGUGGCGUGCuACaUGAagCG- -5'
25951 3' -53.2 NC_005337.1 + 75137 0.66 0.970887
Target:  5'- gGC-UGUACCGCACGGgcagGUagaACUUCcCg -3'
miRNA:   3'- gCGcACGUGGCGUGCUa---CA---UGAAGcG- -5'
25951 3' -53.2 NC_005337.1 + 66018 0.66 0.970887
Target:  5'- gCGCGUGUggGCCauGCACGuccu-CUUCGUg -3'
miRNA:   3'- -GCGCACG--UGG--CGUGCuacauGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 122764 0.66 0.970887
Target:  5'- uGCGcUGCccGgCGCACGAcgcGU-CUUCGCa -3'
miRNA:   3'- gCGC-ACG--UgGCGUGCUa--CAuGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 118105 0.66 0.970887
Target:  5'- gCGCGUGguggagcaaaCGCgGCGCGAgcgcUACUUCGa -3'
miRNA:   3'- -GCGCAC----------GUGgCGUGCUac--AUGAAGCg -5'
25951 3' -53.2 NC_005337.1 + 34617 0.66 0.970887
Target:  5'- gGCGcGCccaGCCGCGCGgcGaUGCcgCGCa -3'
miRNA:   3'- gCGCaCG---UGGCGUGCuaC-AUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 64340 0.66 0.970887
Target:  5'- aGCGUgGCGCCGCG-GcgGUACacaGCc -3'
miRNA:   3'- gCGCA-CGUGGCGUgCuaCAUGaagCG- -5'
25951 3' -53.2 NC_005337.1 + 79408 0.66 0.970887
Target:  5'- aCGCGgcgGCGCgGCAucuCGAUGaACgccgggCGCg -3'
miRNA:   3'- -GCGCa--CGUGgCGU---GCUACaUGaa----GCG- -5'
25951 3' -53.2 NC_005337.1 + 133536 0.66 0.970298
Target:  5'- cCGCGgGCGCCGCGCucucgcccgcGUACccCGCg -3'
miRNA:   3'- -GCGCaCGUGGCGUGcua-------CAUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 133536 0.66 0.970298
Target:  5'- cCGCGgGCGCCGCGCucucgcccgcGUACccCGCg -3'
miRNA:   3'- -GCGCaCGUGGCGUGcua-------CAUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 1440 0.66 0.967861
Target:  5'- gCGCGgcgGCGCCgagguGCGCGAccacGUACgccaCGCa -3'
miRNA:   3'- -GCGCa--CGUGG-----CGUGCUa---CAUGaa--GCG- -5'
25951 3' -53.2 NC_005337.1 + 16139 0.66 0.967861
Target:  5'- gGCG-GCACCGCAcacguCGAaGUagcGCU-CGCg -3'
miRNA:   3'- gCGCaCGUGGCGU-----GCUaCA---UGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 58743 0.66 0.967861
Target:  5'- gCGgGUGCACCGgaGCagca-GCUUCGCg -3'
miRNA:   3'- -GCgCACGUGGCg-UGcuacaUGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 19083 0.66 0.967546
Target:  5'- aGCG-GCACCGUguccaggagguccACGAUGUcagggaGCUUCu- -3'
miRNA:   3'- gCGCaCGUGGCG-------------UGCUACA------UGAAGcg -5'
25951 3' -53.2 NC_005337.1 + 67894 0.66 0.967546
Target:  5'- gCGCGUGCucgaagcgguggaGCCGgACGGgaGUGCcgcgguggUCGCg -3'
miRNA:   3'- -GCGCACG-------------UGGCgUGCUa-CAUGa-------AGCG- -5'
25951 3' -53.2 NC_005337.1 + 133577 0.66 0.964619
Target:  5'- gGCGUGC---GCGCGA---GCUUCGCc -3'
miRNA:   3'- gCGCACGuggCGUGCUacaUGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.