miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 5' -63.1 NC_005337.1 + 133053 0.66 0.601609
Target:  5'- gGGCccgaucuccgaGAGCGCGUgGUcgaaauGC-GCGCCCGUg -3'
miRNA:   3'- gCCG-----------CUCGUGCAgCA------CGcCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 132775 0.68 0.469699
Target:  5'- uGGCGcGCGcCGagGUGaCGGUGCCCa- -3'
miRNA:   3'- gCCGCuCGU-GCagCAC-GCCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 132307 0.68 0.478685
Target:  5'- cCGGCGuGCACGgcggCGgagGgGGCGCUgGc -3'
miRNA:   3'- -GCCGCuCGUGCa---GCa--CgCCGCGGgCa -5'
25951 5' -63.1 NC_005337.1 + 131894 0.7 0.360949
Target:  5'- aGGCGGGCGCGcacguggacgcggUCGaccggugcUGCGGCGCgCUGg -3'
miRNA:   3'- gCCGCUCGUGC-------------AGC--------ACGCCGCG-GGCa -5'
25951 5' -63.1 NC_005337.1 + 131260 0.68 0.443277
Target:  5'- uCGGCGcGCACG-CGcUGcCGGaGCCCGUc -3'
miRNA:   3'- -GCCGCuCGUGCaGC-AC-GCCgCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 128149 0.7 0.36171
Target:  5'- uGGcCGAGCAUGUCGccgggcUGCuGUGUCCGUg -3'
miRNA:   3'- gCC-GCUCGUGCAGC------ACGcCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 127897 0.69 0.385063
Target:  5'- cCGGCGAGCGCGUgCGggccgaGcCGGUGCUgGg -3'
miRNA:   3'- -GCCGCUCGUGCA-GCa-----C-GCCGCGGgCa -5'
25951 5' -63.1 NC_005337.1 + 127783 0.66 0.572488
Target:  5'- ---gGAGCGCGUgGUGCGgGUGCUgGUg -3'
miRNA:   3'- gccgCUCGUGCAgCACGC-CGCGGgCA- -5'
25951 5' -63.1 NC_005337.1 + 127535 0.66 0.572488
Target:  5'- uGGCGAuGUACGguaCcUGcCGGCGcCCCGUg -3'
miRNA:   3'- gCCGCU-CGUGCa--GcAC-GCCGC-GGGCA- -5'
25951 5' -63.1 NC_005337.1 + 126938 0.67 0.524793
Target:  5'- aGGCGGGCGCGgaCGUGaacGCGCgCGa -3'
miRNA:   3'- gCCGCUCGUGCa-GCACgc-CGCGgGCa -5'
25951 5' -63.1 NC_005337.1 + 126785 0.68 0.459916
Target:  5'- cCGGC-AGCcccguggaccuggACGUCGUGCG-CGCCCu- -3'
miRNA:   3'- -GCCGcUCG-------------UGCAGCACGCcGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 126348 0.67 0.496903
Target:  5'- aGGCGAGC-CGcag-GUGGCGCuuGUg -3'
miRNA:   3'- gCCGCUCGuGCagcaCGCCGCGggCA- -5'
25951 5' -63.1 NC_005337.1 + 125508 0.68 0.434657
Target:  5'- aGGUGG--AgGUCGUGCGGCuGCUCGUg -3'
miRNA:   3'- gCCGCUcgUgCAGCACGCCG-CGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 124260 0.7 0.332137
Target:  5'- cCGGgauCGAGCACGaCGacgGCGGCGCCgGc -3'
miRNA:   3'- -GCC---GCUCGUGCaGCa--CGCCGCGGgCa -5'
25951 5' -63.1 NC_005337.1 + 123867 0.72 0.278437
Target:  5'- aCGGCGGGCGCGgcgCGUaCGGC-CUCGUc -3'
miRNA:   3'- -GCCGCUCGUGCa--GCAcGCCGcGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 123688 0.67 0.487754
Target:  5'- uGGUGucCACGgacgcCGUGCGGCggcugggcacGCCCGUg -3'
miRNA:   3'- gCCGCucGUGCa----GCACGCCG----------CGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 123118 1.06 0.000966
Target:  5'- aCGGCGAGCACGUCGUGCGGCGCCCGUc -3'
miRNA:   3'- -GCCGCUCGUGCAGCACGCCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 122911 0.66 0.572488
Target:  5'- uGGCGAGCGCGcUCGaG-GGCGCgaugcugaacCCGg -3'
miRNA:   3'- gCCGCUCGUGC-AGCaCgCCGCG----------GGCa -5'
25951 5' -63.1 NC_005337.1 + 122396 0.7 0.354148
Target:  5'- aGGuCGugcuGCGCGgcggCGcGCGGCGCCUGUc -3'
miRNA:   3'- gCC-GCu---CGUGCa---GCaCGCCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 122325 0.67 0.524793
Target:  5'- -cGCGAuauGCGCGUCccucgacgGCGcGCGCCCGg -3'
miRNA:   3'- gcCGCU---CGUGCAGca------CGC-CGCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.