Results 1 - 20 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26021 | 5' | -60.4 | NC_005342.2 | + | 18168 | 0.66 | 0.456952 |
Target: 5'- cGGCGcuaCGGCAuCGAUcCGCGCUUugGCaCGGu -3' miRNA: 3'- -CCGCc--GCCGU-GCUA-GCGCGAG--UG-GCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 39389 | 0.66 | 0.456952 |
Target: 5'- aGGCGGCGcGCuuccUGGUCggccugccuGCGC-CACUGAc -3' miRNA: 3'- -CCGCCGC-CGu---GCUAG---------CGCGaGUGGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 10614 | 0.66 | 0.451213 |
Target: 5'- -cCGGCGGgAUG-UCGCGCgugacaucaugcagCACCGGc -3' miRNA: 3'- ccGCCGCCgUGCuAGCGCGa-------------GUGGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 19258 | 0.66 | 0.44741 |
Target: 5'- cGGCGGCcGCGCagcuGAUugcCGCGUUCgACCGc -3' miRNA: 3'- -CCGCCGcCGUG----CUA---GCGCGAG-UGGCu -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 15830 | 0.66 | 0.44741 |
Target: 5'- aGCGaGCuGCGCGAg-GCGCggGCCGAc -3' miRNA: 3'- cCGC-CGcCGUGCUagCGCGagUGGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 21328 | 0.66 | 0.44741 |
Target: 5'- aGCGGCGGUgcgacaACGAUCaaCGC-CGCCa- -3' miRNA: 3'- cCGCCGCCG------UGCUAGc-GCGaGUGGcu -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 11049 | 0.66 | 0.44741 |
Target: 5'- gGGCGuGCGGCccauuccgggaAUGAUCGUGCgcgaCGAa -3' miRNA: 3'- -CCGC-CGCCG-----------UGCUAGCGCGagugGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 42988 | 0.66 | 0.43798 |
Target: 5'- gGGCGcaaGgGGCGcCGAUCccggccggcuauGCGCUCguGCCGAu -3' miRNA: 3'- -CCGC---CgCCGU-GCUAG------------CGCGAG--UGGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 32977 | 0.66 | 0.428665 |
Target: 5'- cGGCGuCGGCgucgGCGGUC-CGCUaACCGGc -3' miRNA: 3'- -CCGCcGCCG----UGCUAGcGCGAgUGGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 12288 | 0.66 | 0.428665 |
Target: 5'- -aCGGCuugaauGCGCaGAUCGCGCUCAUgaCGAc -3' miRNA: 3'- ccGCCGc-----CGUG-CUAGCGCGAGUG--GCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 47437 | 0.66 | 0.428665 |
Target: 5'- cGGCaaGGCGaaGUACGAcgaagcguUCaCGCUCGCCGGc -3' miRNA: 3'- -CCG--CCGC--CGUGCU--------AGcGCGAGUGGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 28503 | 0.66 | 0.419468 |
Target: 5'- cGCGGCGGCGCGGcUGCccaUCACg-- -3' miRNA: 3'- cCGCCGCCGUGCUaGCGcg-AGUGgcu -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 5018 | 0.66 | 0.419468 |
Target: 5'- aGGCGGcCGGCuguuggcCGAcgUCgGCGCggCGCUGAa -3' miRNA: 3'- -CCGCC-GCCGu------GCU--AG-CGCGa-GUGGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 27223 | 0.66 | 0.419468 |
Target: 5'- cGGCGaugucCGGCAgCGcgCGCGCcgucaUCACCGc -3' miRNA: 3'- -CCGCc----GCCGU-GCuaGCGCG-----AGUGGCu -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 41311 | 0.66 | 0.419468 |
Target: 5'- cGGCGGauGCGCGccugcUCGaGCgCGCCGAg -3' miRNA: 3'- -CCGCCgcCGUGCu----AGCgCGaGUGGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 13339 | 0.66 | 0.416732 |
Target: 5'- gGGC-GCGGCACGAgcggCGUGUccaugaucuggucgUCGCCu- -3' miRNA: 3'- -CCGcCGCCGUGCUa---GCGCG--------------AGUGGcu -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 11041 | 0.66 | 0.414008 |
Target: 5'- cGGCGGaacuCGGCACcggCGCGCgucgugagcggcgugUCGCCGc -3' miRNA: 3'- -CCGCC----GCCGUGcuaGCGCG---------------AGUGGCu -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 23827 | 0.66 | 0.410392 |
Target: 5'- --aGGCGGcCGCGAacaUUGCGCgCugCGAc -3' miRNA: 3'- ccgCCGCC-GUGCU---AGCGCGaGugGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 20789 | 0.66 | 0.410392 |
Target: 5'- -uCGGgGGCACgcauggcuGAUCGCGC--GCCGAc -3' miRNA: 3'- ccGCCgCCGUG--------CUAGCGCGagUGGCU- -5' |
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26021 | 5' | -60.4 | NC_005342.2 | + | 38468 | 0.66 | 0.410392 |
Target: 5'- uGGaaGCGGcCACGAgcggcaUCGCcgaGCUUGCCGAa -3' miRNA: 3'- -CCgcCGCC-GUGCU------AGCG---CGAGUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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