miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 5' -60.4 NC_005342.2 + 18168 0.66 0.456952
Target:  5'- cGGCGcuaCGGCAuCGAUcCGCGCUUugGCaCGGu -3'
miRNA:   3'- -CCGCc--GCCGU-GCUA-GCGCGAG--UG-GCU- -5'
26021 5' -60.4 NC_005342.2 + 39389 0.66 0.456952
Target:  5'- aGGCGGCGcGCuuccUGGUCggccugccuGCGC-CACUGAc -3'
miRNA:   3'- -CCGCCGC-CGu---GCUAG---------CGCGaGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 10614 0.66 0.451213
Target:  5'- -cCGGCGGgAUG-UCGCGCgugacaucaugcagCACCGGc -3'
miRNA:   3'- ccGCCGCCgUGCuAGCGCGa-------------GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 11049 0.66 0.44741
Target:  5'- gGGCGuGCGGCccauuccgggaAUGAUCGUGCgcgaCGAa -3'
miRNA:   3'- -CCGC-CGCCG-----------UGCUAGCGCGagugGCU- -5'
26021 5' -60.4 NC_005342.2 + 21328 0.66 0.44741
Target:  5'- aGCGGCGGUgcgacaACGAUCaaCGC-CGCCa- -3'
miRNA:   3'- cCGCCGCCG------UGCUAGc-GCGaGUGGcu -5'
26021 5' -60.4 NC_005342.2 + 15830 0.66 0.44741
Target:  5'- aGCGaGCuGCGCGAg-GCGCggGCCGAc -3'
miRNA:   3'- cCGC-CGcCGUGCUagCGCGagUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 19258 0.66 0.44741
Target:  5'- cGGCGGCcGCGCagcuGAUugcCGCGUUCgACCGc -3'
miRNA:   3'- -CCGCCGcCGUG----CUA---GCGCGAG-UGGCu -5'
26021 5' -60.4 NC_005342.2 + 42988 0.66 0.43798
Target:  5'- gGGCGcaaGgGGCGcCGAUCccggccggcuauGCGCUCguGCCGAu -3'
miRNA:   3'- -CCGC---CgCCGU-GCUAG------------CGCGAG--UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 32977 0.66 0.428665
Target:  5'- cGGCGuCGGCgucgGCGGUC-CGCUaACCGGc -3'
miRNA:   3'- -CCGCcGCCG----UGCUAGcGCGAgUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 12288 0.66 0.428665
Target:  5'- -aCGGCuugaauGCGCaGAUCGCGCUCAUgaCGAc -3'
miRNA:   3'- ccGCCGc-----CGUG-CUAGCGCGAGUG--GCU- -5'
26021 5' -60.4 NC_005342.2 + 47437 0.66 0.428665
Target:  5'- cGGCaaGGCGaaGUACGAcgaagcguUCaCGCUCGCCGGc -3'
miRNA:   3'- -CCG--CCGC--CGUGCU--------AGcGCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 5018 0.66 0.419468
Target:  5'- aGGCGGcCGGCuguuggcCGAcgUCgGCGCggCGCUGAa -3'
miRNA:   3'- -CCGCC-GCCGu------GCU--AG-CGCGa-GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 28503 0.66 0.419468
Target:  5'- cGCGGCGGCGCGGcUGCccaUCACg-- -3'
miRNA:   3'- cCGCCGCCGUGCUaGCGcg-AGUGgcu -5'
26021 5' -60.4 NC_005342.2 + 27223 0.66 0.419468
Target:  5'- cGGCGaugucCGGCAgCGcgCGCGCcgucaUCACCGc -3'
miRNA:   3'- -CCGCc----GCCGU-GCuaGCGCG-----AGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 41311 0.66 0.419468
Target:  5'- cGGCGGauGCGCGccugcUCGaGCgCGCCGAg -3'
miRNA:   3'- -CCGCCgcCGUGCu----AGCgCGaGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 13339 0.66 0.416732
Target:  5'- gGGC-GCGGCACGAgcggCGUGUccaugaucuggucgUCGCCu- -3'
miRNA:   3'- -CCGcCGCCGUGCUa---GCGCG--------------AGUGGcu -5'
26021 5' -60.4 NC_005342.2 + 11041 0.66 0.414008
Target:  5'- cGGCGGaacuCGGCACcggCGCGCgucgugagcggcgugUCGCCGc -3'
miRNA:   3'- -CCGCC----GCCGUGcuaGCGCG---------------AGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 38468 0.66 0.410392
Target:  5'- uGGaaGCGGcCACGAgcggcaUCGCcgaGCUUGCCGAa -3'
miRNA:   3'- -CCgcCGCC-GUGCU------AGCG---CGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 23827 0.66 0.410392
Target:  5'- --aGGCGGcCGCGAacaUUGCGCgCugCGAc -3'
miRNA:   3'- ccgCCGCC-GUGCU---AGCGCGaGugGCU- -5'
26021 5' -60.4 NC_005342.2 + 20789 0.66 0.410392
Target:  5'- -uCGGgGGCACgcauggcuGAUCGCGC--GCCGAc -3'
miRNA:   3'- ccGCCgCCGUG--------CUAGCGCGagUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.