miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26022 5' -57.2 NC_005342.2 + 44150 0.66 0.597493
Target:  5'- cGGCGCG---UGCGA-GGCGCuugGCCu -3'
miRNA:   3'- -CCGCGUgcgAUGCUcCCGCGuuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 21638 0.66 0.597493
Target:  5'- cGGaagGCAUGCUGCGc--GCGCAGaucgGCCa -3'
miRNA:   3'- -CCg--CGUGCGAUGCuccCGCGUUa---CGG- -5'
26022 5' -57.2 NC_005342.2 + 38312 0.66 0.597493
Target:  5'- aGCGC-CaGCUACagccGGGCGCGccgcugcccgugGUGCCc -3'
miRNA:   3'- cCGCGuG-CGAUGcu--CCCGCGU------------UACGG- -5'
26022 5' -57.2 NC_005342.2 + 43098 0.66 0.597493
Target:  5'- aGCGCGCGCUACauggucAGcGGCgGCAGcgGCa -3'
miRNA:   3'- cCGCGUGCGAUGc-----UC-CCG-CGUUa-CGg -5'
26022 5' -57.2 NC_005342.2 + 34124 0.66 0.596402
Target:  5'- cGGCGCgcucaauGCGCU-CGAcGcGGCGCccgucGCCg -3'
miRNA:   3'- -CCGCG-------UGCGAuGCU-C-CCGCGuua--CGG- -5'
26022 5' -57.2 NC_005342.2 + 30023 0.66 0.595312
Target:  5'- cGuCGCAC-CUGCGAcgccacccgccaGGCGCGcgGCCg -3'
miRNA:   3'- cC-GCGUGcGAUGCUc-----------CCGCGUuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 39925 0.66 0.586602
Target:  5'- --gGCACGCUguACGAaGuGCGCGAcgcgGCCg -3'
miRNA:   3'- ccgCGUGCGA--UGCUcC-CGCGUUa---CGG- -5'
26022 5' -57.2 NC_005342.2 + 44969 0.66 0.586602
Target:  5'- -uCGCGCGCUACGucGcGGCGgAcgcGCCg -3'
miRNA:   3'- ccGCGUGCGAUGCu-C-CCGCgUua-CGG- -5'
26022 5' -57.2 NC_005342.2 + 29600 0.66 0.575749
Target:  5'- cGGCGaaGCGCUGCGcgaucGGGCcacGCGcgGCg -3'
miRNA:   3'- -CCGCg-UGCGAUGCu----CCCG---CGUuaCGg -5'
26022 5' -57.2 NC_005342.2 + 18387 0.66 0.569259
Target:  5'- cGCGCGCGCUucgccGCGAaugaccagucgaccgGcGGCGCGccgAUcGCCa -3'
miRNA:   3'- cCGCGUGCGA-----UGCU---------------C-CCGCGU---UA-CGG- -5'
26022 5' -57.2 NC_005342.2 + 30966 0.66 0.564943
Target:  5'- aGCGUgcacgagucgaGCGCgGCGAcGGCGU-AUGCCg -3'
miRNA:   3'- cCGCG-----------UGCGaUGCUcCCGCGuUACGG- -5'
26022 5' -57.2 NC_005342.2 + 11488 0.66 0.564943
Target:  5'- -aCGagGCGCUGCGAaGGCGUcAUGUCg -3'
miRNA:   3'- ccGCg-UGCGAUGCUcCCGCGuUACGG- -5'
26022 5' -57.2 NC_005342.2 + 9311 0.66 0.564943
Target:  5'- cGGCGCuuuCGUguucguCGucGGCGCGcgGCg -3'
miRNA:   3'- -CCGCGu--GCGau----GCucCCGCGUuaCGg -5'
26022 5' -57.2 NC_005342.2 + 27391 0.66 0.55419
Target:  5'- cGGCGCgacccgACGCgccgACGAucaGcGGCGCg--GCCa -3'
miRNA:   3'- -CCGCG------UGCGa---UGCU---C-CCGCGuuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 38176 0.66 0.55419
Target:  5'- uGGCGCgACGCgAUGAuuGCGC--UGCCg -3'
miRNA:   3'- -CCGCG-UGCGaUGCUccCGCGuuACGG- -5'
26022 5' -57.2 NC_005342.2 + 38476 0.66 0.546699
Target:  5'- aGGCGCACGCaGCGAuucugcaGaagcucgagcagcucGGCGgCGGUGCg -3'
miRNA:   3'- -CCGCGUGCGaUGCU-------C---------------CCGC-GUUACGg -5'
26022 5' -57.2 NC_005342.2 + 7467 0.66 0.543498
Target:  5'- cGCGUGC-CUGCGgccAGGucuGCGCGAUGCg -3'
miRNA:   3'- cCGCGUGcGAUGC---UCC---CGCGUUACGg -5'
26022 5' -57.2 NC_005342.2 + 15830 0.66 0.543498
Target:  5'- aGCGa--GCUGCGcGaGGCGCGG-GCCg -3'
miRNA:   3'- cCGCgugCGAUGCuC-CCGCGUUaCGG- -5'
26022 5' -57.2 NC_005342.2 + 38900 0.66 0.543498
Target:  5'- uGCGCGCGCUGCaccGGCaGCAc-GCCc -3'
miRNA:   3'- cCGCGUGCGAUGcucCCG-CGUuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 38983 0.66 0.543498
Target:  5'- aGGCGCACGCgcgcGCGAu--CGCAGguugGCUg -3'
miRNA:   3'- -CCGCGUGCGa---UGCUcccGCGUUa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.