miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 5' -60.5 NC_005342.2 + 16918 0.66 0.424615
Target:  5'- gGCCgGCAUUgCgggcGCCGUGCucGGCGUCGg -3'
miRNA:   3'- aUGG-CGUGA-Ga---UGGCGCGc-CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 24863 0.66 0.424615
Target:  5'- aACCGCACgggaUAUUGCGgauaGGGCGgCGg -3'
miRNA:   3'- aUGGCGUGag--AUGGCGCg---CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 29410 0.66 0.424615
Target:  5'- cGCCGCGCcggCUGCCGCaccCGGGuUGcCGc -3'
miRNA:   3'- aUGGCGUGa--GAUGGCGc--GCCC-GCaGC- -5'
26024 5' -60.5 NC_005342.2 + 28401 0.66 0.415389
Target:  5'- gUGCCGCGC-CgACCGUGCGaccGGCGcCc -3'
miRNA:   3'- -AUGGCGUGaGaUGGCGCGC---CCGCaGc -5'
26024 5' -60.5 NC_005342.2 + 41632 0.66 0.406288
Target:  5'- aUACCgGCGCaUCguaaaAUCGCGCGGuGCGgUCGu -3'
miRNA:   3'- -AUGG-CGUG-AGa----UGGCGCGCC-CGC-AGC- -5'
26024 5' -60.5 NC_005342.2 + 9956 0.66 0.406288
Target:  5'- aACCGCcgacguACUCU-UUGCGCGGuuGUCGg -3'
miRNA:   3'- aUGGCG------UGAGAuGGCGCGCCcgCAGC- -5'
26024 5' -60.5 NC_005342.2 + 18696 0.66 0.406288
Target:  5'- aACCGaCGCcCgccUCGUGCGGGCGUUu -3'
miRNA:   3'- aUGGC-GUGaGau-GGCGCGCCCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 6890 0.66 0.406288
Target:  5'- uUugCGCACguuugagGCgUGCGCGGGCGcCa -3'
miRNA:   3'- -AugGCGUGaga----UG-GCGCGCCCGCaGc -5'
26024 5' -60.5 NC_005342.2 + 47775 0.66 0.406288
Target:  5'- --gCGCGCUCUGgCGUGUuGGGCGcUGg -3'
miRNA:   3'- augGCGUGAGAUgGCGCG-CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 27043 0.66 0.397312
Target:  5'- cACgGC-CUUUACCuCGaCGGGCGUUGc -3'
miRNA:   3'- aUGgCGuGAGAUGGcGC-GCCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 22644 0.66 0.397312
Target:  5'- --aCGUACgUCgcgGCCGuCGCcGGCGUCGg -3'
miRNA:   3'- augGCGUG-AGa--UGGC-GCGcCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 20550 0.66 0.388465
Target:  5'- gGCCGCGCcgCUgAUCGU-CGGcGCGUCGg -3'
miRNA:   3'- aUGGCGUGa-GA-UGGCGcGCC-CGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 42965 0.66 0.379749
Target:  5'- cGCCGCA-UCUGCCagugagacggggGCGCaagGGGCGcCGa -3'
miRNA:   3'- aUGGCGUgAGAUGG------------CGCG---CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 44324 0.66 0.379749
Target:  5'- cACCGUGCcgCUgccGCCGCGCGagcaGGCGUa- -3'
miRNA:   3'- aUGGCGUGa-GA---UGGCGCGC----CCGCAgc -5'
26024 5' -60.5 NC_005342.2 + 31336 0.66 0.379749
Target:  5'- gGCCGCugUg-GCCGCGCGcGuGaacaGUCGg -3'
miRNA:   3'- aUGGCGugAgaUGGCGCGC-C-Cg---CAGC- -5'
26024 5' -60.5 NC_005342.2 + 13869 0.67 0.371164
Target:  5'- gGCCgGCACgg-GCUGCGCGGcggcCGUCGc -3'
miRNA:   3'- aUGG-CGUGagaUGGCGCGCCc---GCAGC- -5'
26024 5' -60.5 NC_005342.2 + 29608 0.67 0.371164
Target:  5'- cGCUGCGCgaUCggGCCaCGCGcGGCGUCc -3'
miRNA:   3'- aUGGCGUG--AGa-UGGcGCGC-CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 17910 0.67 0.362713
Target:  5'- cGCCgGUGCg--GCCGCGCGccuggcggguGGCGUCGc -3'
miRNA:   3'- aUGG-CGUGagaUGGCGCGC----------CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 45649 0.67 0.362713
Target:  5'- gGCCGCACggugCUcgcguuCCGCcaguucaacGCGGGCGUg- -3'
miRNA:   3'- aUGGCGUGa---GAu-----GGCG---------CGCCCGCAgc -5'
26024 5' -60.5 NC_005342.2 + 814 0.67 0.354396
Target:  5'- cGCCuGCGCgUCgcuCgGCGCGGGUGUUu -3'
miRNA:   3'- aUGG-CGUG-AGau-GgCGCGCCCGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.