miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26025 5' -56.9 NC_005342.2 + 34165 0.66 0.627541
Target:  5'- gGCCGC-CCGcaucauagaccugaaUACCAuccgcguuuGGCGCGccGCCa -3'
miRNA:   3'- -CGGCGcGGC---------------AUGGUu--------CCGUGCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 40280 0.66 0.623167
Target:  5'- uCCGCGCCG-AUCAccGCuACGacGCCa -3'
miRNA:   3'- cGGCGCGGCaUGGUucCG-UGCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 18490 0.66 0.623167
Target:  5'- cGCCGCuGCCGgcacGCCGAcGG-ACGcUGCa -3'
miRNA:   3'- -CGGCG-CGGCa---UGGUU-CCgUGCaACGg -5'
26025 5' -56.9 NC_005342.2 + 44891 0.66 0.623167
Target:  5'- gGCCGCGCU-UGCUGAuGCGCGcgGCa -3'
miRNA:   3'- -CGGCGCGGcAUGGUUcCGUGCaaCGg -5'
26025 5' -56.9 NC_005342.2 + 46661 0.66 0.623167
Target:  5'- -gCGCGCa--GCCAAGGCgGCGcgcGCCg -3'
miRNA:   3'- cgGCGCGgcaUGGUUCCG-UGCaa-CGG- -5'
26025 5' -56.9 NC_005342.2 + 41243 0.66 0.623167
Target:  5'- --gGCGCCGUGgCGcucgaauuGaGCACGUUGCa -3'
miRNA:   3'- cggCGCGGCAUgGUu-------C-CGUGCAACGg -5'
26025 5' -56.9 NC_005342.2 + 6230 0.66 0.623167
Target:  5'- gGCCGCGCgcuucacgCGcACCGAcaggaagccuuGGCGCGgucGCCc -3'
miRNA:   3'- -CGGCGCG--------GCaUGGUU-----------CCGUGCaa-CGG- -5'
26025 5' -56.9 NC_005342.2 + 30677 0.66 0.622073
Target:  5'- cGCUGCGCCG-GCCGgcguucacgucgaAGGCAaucUGCa -3'
miRNA:   3'- -CGGCGCGGCaUGGU-------------UCCGUgcaACGg -5'
26025 5' -56.9 NC_005342.2 + 17609 0.66 0.618794
Target:  5'- cGCCGCGCCuUGCCGcgcugcuGCACGaccuggcguccgGCCu -3'
miRNA:   3'- -CGGCGCGGcAUGGUuc-----CGUGCaa----------CGG- -5'
26025 5' -56.9 NC_005342.2 + 47141 0.66 0.612237
Target:  5'- cCCGCGCCGaGCgAcgcgcAGGCgaccgcagcuACGUcGCCg -3'
miRNA:   3'- cGGCGCGGCaUGgU-----UCCG----------UGCAaCGG- -5'
26025 5' -56.9 NC_005342.2 + 47183 0.66 0.612237
Target:  5'- cCUGCGCCGgcgACC--GGCACGcucaagGUCg -3'
miRNA:   3'- cGGCGCGGCa--UGGuuCCGUGCaa----CGG- -5'
26025 5' -56.9 NC_005342.2 + 385 0.66 0.612237
Target:  5'- aGaaGCGCCGU-CCGcaggcGGCGCGcUGCa -3'
miRNA:   3'- -CggCGCGGCAuGGUu----CCGUGCaACGg -5'
26025 5' -56.9 NC_005342.2 + 44884 0.66 0.612237
Target:  5'- cGgCGCGCUGUcgaaCGAGGCGaagaUGCCg -3'
miRNA:   3'- -CgGCGCGGCAug--GUUCCGUgca-ACGG- -5'
26025 5' -56.9 NC_005342.2 + 24683 0.66 0.611145
Target:  5'- gGUCGUGCCG-ACCuggcucaAAGGCugGacgGUCa -3'
miRNA:   3'- -CGGCGCGGCaUGG-------UUCCGugCaa-CGG- -5'
26025 5' -56.9 NC_005342.2 + 39566 0.66 0.601325
Target:  5'- gGCgGCaCCGUAUC--GGCgACGUUGCUc -3'
miRNA:   3'- -CGgCGcGGCAUGGuuCCG-UGCAACGG- -5'
26025 5' -56.9 NC_005342.2 + 32474 0.66 0.601325
Target:  5'- cGCUGcCGCCG-GCCAuaagcgcGGCACcUUGCa -3'
miRNA:   3'- -CGGC-GCGGCaUGGUu------CCGUGcAACGg -5'
26025 5' -56.9 NC_005342.2 + 20323 0.66 0.601325
Target:  5'- cGCCGaCGCUGUGCCcgugaaugcuGGCaACGgcaUGCa -3'
miRNA:   3'- -CGGC-GCGGCAUGGuu--------CCG-UGCa--ACGg -5'
26025 5' -56.9 NC_005342.2 + 16918 0.66 0.601325
Target:  5'- gGCCggcauugcggGCGCCGUGCuCGGcgucGGCGCagGUgcgGCCg -3'
miRNA:   3'- -CGG----------CGCGGCAUG-GUU----CCGUG--CAa--CGG- -5'
26025 5' -56.9 NC_005342.2 + 29527 0.66 0.590438
Target:  5'- aCCGgGCCGUugaugGCgAucGGCGCGccGCCg -3'
miRNA:   3'- cGGCgCGGCA-----UGgUu-CCGUGCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 28142 0.66 0.590438
Target:  5'- -gCGCGCC--GCCGAGGCugacaGCGaUGCg -3'
miRNA:   3'- cgGCGCGGcaUGGUUCCG-----UGCaACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.