miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 3' -56.9 NC_005342.2 + 46641 0.66 0.623167
Target:  5'- cGCGAGCGccGCGaaGCAUCg-CGCGCa -3'
miRNA:   3'- -UGCUUGCa-CGCgcCGUAGgaGUGCGg -5'
26029 3' -56.9 NC_005342.2 + 4880 0.66 0.623167
Target:  5'- uGCGAuaGUGCGCcGUcgCCauccaaaacaUCGCGCCg -3'
miRNA:   3'- -UGCUugCACGCGcCGuaGG----------AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 45681 0.66 0.612237
Target:  5'- cGCGGGCGUGC-CGGCca-CggcgCACGaCCu -3'
miRNA:   3'- -UGCUUGCACGcGCCGuagGa---GUGC-GG- -5'
26029 3' -56.9 NC_005342.2 + 32073 0.66 0.612237
Target:  5'- cCGAuaGCGUGCGCaGCAcgacguUCa--GCGCCg -3'
miRNA:   3'- uGCU--UGCACGCGcCGU------AGgagUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 29668 0.66 0.612237
Target:  5'- cGCGAgaagcGCGUgccgaGCGCGGCcgcgcugCCgccaGCGCCg -3'
miRNA:   3'- -UGCU-----UGCA-----CGCGCCGua-----GGag--UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 22509 0.66 0.612237
Target:  5'- cCGggUGU-CGUGGUGaCCggCACGCCa -3'
miRNA:   3'- uGCuuGCAcGCGCCGUaGGa-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 403 0.66 0.611145
Target:  5'- gACaGGC-UGCGCGGCAgugcggaacgcaaUCUUCACGgCg -3'
miRNA:   3'- -UGcUUGcACGCGCCGU-------------AGGAGUGCgG- -5'
26029 3' -56.9 NC_005342.2 + 37912 0.66 0.601325
Target:  5'- cCGAcCGaGCuCGGCAUCCcgaCACGCUg -3'
miRNA:   3'- uGCUuGCaCGcGCCGUAGGa--GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 8741 0.66 0.601325
Target:  5'- cCGAuCG-GCGUGuCGUCCgUUACGCCg -3'
miRNA:   3'- uGCUuGCaCGCGCcGUAGG-AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 35656 0.66 0.601325
Target:  5'- uGCGAACGUcaacccGCGCGaggcuggcgcGCAggacgCCgcaaugCGCGCCg -3'
miRNA:   3'- -UGCUUGCA------CGCGC----------CGUa----GGa-----GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 4799 0.66 0.601325
Target:  5'- aGCGcGCGaUGCGC-GCGUCCgUCA-GCCc -3'
miRNA:   3'- -UGCuUGC-ACGCGcCGUAGG-AGUgCGG- -5'
26029 3' -56.9 NC_005342.2 + 28749 0.66 0.601325
Target:  5'- cACGAugACGaGCGCGaGCAcugcgCCgcccacgaUCGCGCCg -3'
miRNA:   3'- -UGCU--UGCaCGCGC-CGUa----GG--------AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 8459 0.66 0.590438
Target:  5'- cGCGAGCG-GCGuCGGUcggaucGUCCacugCAgGCCc -3'
miRNA:   3'- -UGCUUGCaCGC-GCCG------UAGGa---GUgCGG- -5'
26029 3' -56.9 NC_005342.2 + 45829 0.66 0.579587
Target:  5'- cCGAGCGcggUGCGCgcuacGGCAaguUCgaggaUCACGCCg -3'
miRNA:   3'- uGCUUGC---ACGCG-----CCGU---AGg----AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 2400 0.66 0.579587
Target:  5'- aGCGGcaACGUgccuugguacgGCGCGGCGaacaCUUgCGCGCCa -3'
miRNA:   3'- -UGCU--UGCA-----------CGCGCCGUa---GGA-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 30949 0.66 0.568778
Target:  5'- cGCG-ACGgccGCGCGGCG-Ca--GCGCCg -3'
miRNA:   3'- -UGCuUGCa--CGCGCCGUaGgagUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 42933 0.66 0.568778
Target:  5'- uACGAAccucgugcCGUGCGUucGCAUgCC-CGCGCCg -3'
miRNA:   3'- -UGCUU--------GCACGCGc-CGUA-GGaGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 39193 0.66 0.568778
Target:  5'- gGCGAagAUGgaagcGCGCGGCGUaacggaCgaCACGCCg -3'
miRNA:   3'- -UGCU--UGCa----CGCGCCGUA------GgaGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 28216 0.66 0.568778
Target:  5'- cGCGucguuGACG-GCaGCGGCgccGUCUUgCACGCCa -3'
miRNA:   3'- -UGC-----UUGCaCG-CGCCG---UAGGA-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 21135 0.66 0.5677
Target:  5'- aACGAGCGcGCGCaacuugacgugauGGUgcgCUUCGCGCUg -3'
miRNA:   3'- -UGCUUGCaCGCG-------------CCGua-GGAGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.