miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26030 5' -66 NC_005342.2 + 30226 0.66 0.240099
Target:  5'- cGACCagGC-UGCCGGCCaGCuuGUCc -3'
miRNA:   3'- uCUGGg-CGcGCGGCCGGaCGggCAGc -5'
26030 5' -66 NC_005342.2 + 30859 0.66 0.240099
Target:  5'- cGGCgaaCGCGuCGCC-GCCUGCCuuggCGUCGc -3'
miRNA:   3'- uCUGg--GCGC-GCGGcCGGACGG----GCAGC- -5'
26030 5' -66 NC_005342.2 + 4639 0.66 0.238348
Target:  5'- cAGGCCgGCGCGCgGGUCuuucuucaggaucgUGCCa-UCGg -3'
miRNA:   3'- -UCUGGgCGCGCGgCCGG--------------ACGGgcAGC- -5'
26030 5' -66 NC_005342.2 + 6769 0.66 0.234303
Target:  5'- cGACa-GCGCGCCGaUCUucGCCUGUCGc -3'
miRNA:   3'- uCUGggCGCGCGGCcGGA--CGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 24209 0.66 0.234303
Target:  5'- cGACUcguCGCGUGUCGaG-CUGCCCGUUa -3'
miRNA:   3'- uCUGG---GCGCGCGGC-CgGACGGGCAGc -5'
26030 5' -66 NC_005342.2 + 26796 0.66 0.23373
Target:  5'- uAGGCgCGCuucguugccgacgGC-CCGGCCUGCagCGUCGu -3'
miRNA:   3'- -UCUGgGCG-------------CGcGGCCGGACGg-GCAGC- -5'
26030 5' -66 NC_005342.2 + 35518 0.66 0.228626
Target:  5'- cGACCCggGCGUGCCGGCCga--CGaCGa -3'
miRNA:   3'- uCUGGG--CGCGCGGCCGGacggGCaGC- -5'
26030 5' -66 NC_005342.2 + 765 0.66 0.228626
Target:  5'- cGACCUugaGCGUGCCGGUC-GCCgG-CGc -3'
miRNA:   3'- uCUGGG---CGCGCGGCCGGaCGGgCaGC- -5'
26030 5' -66 NC_005342.2 + 29364 0.66 0.228626
Target:  5'- -cGCCUGcCGCGCCGGUC-GUuuGUUGc -3'
miRNA:   3'- ucUGGGC-GCGCGGCCGGaCGggCAGC- -5'
26030 5' -66 NC_005342.2 + 705 0.66 0.228626
Target:  5'- -uACUgGuCGCGCCGGCCggcGCCuCGUUc -3'
miRNA:   3'- ucUGGgC-GCGCGGCCGGa--CGG-GCAGc -5'
26030 5' -66 NC_005342.2 + 22830 0.66 0.228064
Target:  5'- cAGGCCgcgaacgUGCGCGCCGccgugcucGCCgUGCCCGg-- -3'
miRNA:   3'- -UCUGG-------GCGCGCGGC--------CGG-ACGGGCagc -5'
26030 5' -66 NC_005342.2 + 46114 0.66 0.226945
Target:  5'- cGGGCCaggCGCGCcagaaccgcacgacGCCGGCCUGCaCGcUCu -3'
miRNA:   3'- -UCUGG---GCGCG--------------CGGCCGGACGgGC-AGc -5'
26030 5' -66 NC_005342.2 + 11264 0.66 0.223065
Target:  5'- ---gCCGCGCGCUGuugaaCUGCgCCGUCGc -3'
miRNA:   3'- ucugGGCGCGCGGCcg---GACG-GGCAGC- -5'
26030 5' -66 NC_005342.2 + 28025 0.66 0.223065
Target:  5'- cGGCUCGcCGC-CCGGCgC-GCUCGUCGu -3'
miRNA:   3'- uCUGGGC-GCGcGGCCG-GaCGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 47752 0.66 0.217619
Target:  5'- -cAUCgGCGCGUucUGGCUUGCCCG-CGc -3'
miRNA:   3'- ucUGGgCGCGCG--GCCGGACGGGCaGC- -5'
26030 5' -66 NC_005342.2 + 18059 0.66 0.212288
Target:  5'- cGGCgUGCGCGaguCCGGCUuggUGCCC-UCGg -3'
miRNA:   3'- uCUGgGCGCGC---GGCCGG---ACGGGcAGC- -5'
26030 5' -66 NC_005342.2 + 45359 0.66 0.212288
Target:  5'- uGAaCCGCGCgGUCGGCCUGUCgCG-Ca -3'
miRNA:   3'- uCUgGGCGCG-CGGCCGGACGG-GCaGc -5'
26030 5' -66 NC_005342.2 + 39030 0.66 0.21071
Target:  5'- -aGCCCGCgcacgcgauggacaGCGCCGGCgCgaacgaaGCCgCGUCGc -3'
miRNA:   3'- ucUGGGCG--------------CGCGGCCG-Ga------CGG-GCAGC- -5'
26030 5' -66 NC_005342.2 + 47427 0.66 0.207069
Target:  5'- aAGGCCUGCGCGCCcugaacguGCaagGCUaCGUCGa -3'
miRNA:   3'- -UCUGGGCGCGCGGc-------CGga-CGG-GCAGC- -5'
26030 5' -66 NC_005342.2 + 33810 0.67 0.201962
Target:  5'- cGGACgaGCgGC-CCGGCaucggGCCCGUCGu -3'
miRNA:   3'- -UCUGggCG-CGcGGCCGga---CGGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.