miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26032 5' -54.6 NC_005342.2 + 10231 0.66 0.752177
Target:  5'- cGgGUcggCGCacuGGAaGCCGAgCGACGCggGCa -3'
miRNA:   3'- -CgCAa--GCG---UCUaCGGCU-GCUGCGa-CG- -5'
26032 5' -54.6 NC_005342.2 + 18205 0.66 0.752177
Target:  5'- cGCGgcaUCGCaauacgcgccGGAaaucuacgacGCCGACGgcACGCUGCu -3'
miRNA:   3'- -CGCa--AGCG----------UCUa---------CGGCUGC--UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 40561 0.66 0.752177
Target:  5'- gGCGcgCGCcuucuGGUcGCCGGCGAUGgUcGCg -3'
miRNA:   3'- -CGCaaGCGu----CUA-CGGCUGCUGCgA-CG- -5'
26032 5' -54.6 NC_005342.2 + 14794 0.66 0.752177
Target:  5'- cGCGagcaggucaUUCGCAGAccacggcgUGCCGAucagaaugacgcCGGagaGCUGCu -3'
miRNA:   3'- -CGC---------AAGCGUCU--------ACGGCU------------GCUg--CGACG- -5'
26032 5' -54.6 NC_005342.2 + 9155 0.66 0.752177
Target:  5'- uGCGUUCguucgcgacgGCAG-UGUCGAUcGCGgUGCg -3'
miRNA:   3'- -CGCAAG----------CGUCuACGGCUGcUGCgACG- -5'
26032 5' -54.6 NC_005342.2 + 26734 0.66 0.751136
Target:  5'- cCGUUC-CAGAUGCgcgCGACGGcCGCccauugaUGCg -3'
miRNA:   3'- cGCAAGcGUCUACG---GCUGCU-GCG-------ACG- -5'
26032 5' -54.6 NC_005342.2 + 47198 0.66 0.751136
Target:  5'- cCGUUCGaCGcAUcgacuagcaacgcGCCGGCGGCGaCUGCc -3'
miRNA:   3'- cGCAAGC-GUcUA-------------CGGCUGCUGC-GACG- -5'
26032 5' -54.6 NC_005342.2 + 30944 0.66 0.741707
Target:  5'- cCGgUCGCGacgGCCGcGCGGCGCaGCg -3'
miRNA:   3'- cGCaAGCGUcuaCGGC-UGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 15470 0.66 0.741707
Target:  5'- gGCuGcUCGCGGcgGucaCCGGCGGCGCgucaaGCg -3'
miRNA:   3'- -CG-CaAGCGUCuaC---GGCUGCUGCGa----CG- -5'
26032 5' -54.6 NC_005342.2 + 8391 0.66 0.741707
Target:  5'- aCG-UCGCcgauacGGUGCCGcCGACGUUGa -3'
miRNA:   3'- cGCaAGCGu-----CUACGGCuGCUGCGACg -5'
26032 5' -54.6 NC_005342.2 + 32375 0.66 0.731124
Target:  5'- aCGUUCGCcGAaaccgUGaCCGACGAgcaGCgUGCg -3'
miRNA:   3'- cGCAAGCGuCU-----AC-GGCUGCUg--CG-ACG- -5'
26032 5' -54.6 NC_005342.2 + 33887 0.66 0.731124
Target:  5'- aGCG-UCGaCGGuAUGaCGAUcGCGCUGCa -3'
miRNA:   3'- -CGCaAGC-GUC-UACgGCUGcUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 42004 0.66 0.731124
Target:  5'- cCGgcCGCaAGGUGCCGAcCGAgGCguaucGCg -3'
miRNA:   3'- cGCaaGCG-UCUACGGCU-GCUgCGa----CG- -5'
26032 5' -54.6 NC_005342.2 + 29668 0.66 0.731124
Target:  5'- cGCGagaaGCGcGUGCCGAgCGcggccGCGCUGCc -3'
miRNA:   3'- -CGCaag-CGUcUACGGCU-GC-----UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 14973 0.66 0.720441
Target:  5'- -gGUUaGCGGAccGCCGAcgcCGACGCcGCg -3'
miRNA:   3'- cgCAAgCGUCUa-CGGCU---GCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 22964 0.66 0.720441
Target:  5'- aGCGUgacgggcggCGCGGAcGCaGACGucGCGCUcGCg -3'
miRNA:   3'- -CGCAa--------GCGUCUaCGgCUGC--UGCGA-CG- -5'
26032 5' -54.6 NC_005342.2 + 13108 0.66 0.719368
Target:  5'- uGCGUcaUGCuGAUGCCGGCGAacgaauaCGUcgGCu -3'
miRNA:   3'- -CGCAa-GCGuCUACGGCUGCU-------GCGa-CG- -5'
26032 5' -54.6 NC_005342.2 + 17495 0.66 0.709669
Target:  5'- aGCGaUUCGguGAguaccUCGGCGACGCcacgGCc -3'
miRNA:   3'- -CGC-AAGCguCUac---GGCUGCUGCGa---CG- -5'
26032 5' -54.6 NC_005342.2 + 29714 0.66 0.709669
Target:  5'- uGCGgauUCaGCAGcGUGCCGuCGGCGUcGUa -3'
miRNA:   3'- -CGCa--AG-CGUC-UACGGCuGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 1052 0.66 0.709669
Target:  5'- cGCGUUccaaguccucCGUAGucaUCGGCGcACGCUGCg -3'
miRNA:   3'- -CGCAA----------GCGUCuacGGCUGC-UGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.