miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 3' -52.3 NC_005342.2 + 38014 0.65 0.863519
Target:  5'- uCGGCGguUCGguacacaaCGUGCGGUucgacgGCa -3'
miRNA:   3'- -GCCGCguAGCauuuua--GCGCGCCA------CG- -5'
26035 3' -52.3 NC_005342.2 + 28036 0.66 0.858478
Target:  5'- cCGGCGCGcUCGUc--GUCGaugauGCGGacgGCg -3'
miRNA:   3'- -GCCGCGU-AGCAuuuUAGCg----CGCCa--CG- -5'
26035 3' -52.3 NC_005342.2 + 6892 0.66 0.858478
Target:  5'- -uGCGCA-CGUuuGAggcgUGCGCGG-GCg -3'
miRNA:   3'- gcCGCGUaGCAuuUUa---GCGCGCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 9173 0.66 0.858478
Target:  5'- aCGGCGCA-CG---AGUCGCGCGuacucGCc -3'
miRNA:   3'- -GCCGCGUaGCauuUUAGCGCGCca---CG- -5'
26035 3' -52.3 NC_005342.2 + 7361 0.66 0.849878
Target:  5'- cCGGCGCA--GUAgauaccGAGUCGCGCGa--- -3'
miRNA:   3'- -GCCGCGUagCAU------UUUAGCGCGCcacg -5'
26035 3' -52.3 NC_005342.2 + 22164 0.66 0.849878
Target:  5'- uCGGCGUGcgcgCGUGAuaaGAUCGCGCGc--- -3'
miRNA:   3'- -GCCGCGUa---GCAUU---UUAGCGCGCcacg -5'
26035 3' -52.3 NC_005342.2 + 33460 0.66 0.849878
Target:  5'- -cGUGCG-CGUGAucauGUCGUGCGaUGCg -3'
miRNA:   3'- gcCGCGUaGCAUUu---UAGCGCGCcACG- -5'
26035 3' -52.3 NC_005342.2 + 28165 0.66 0.848129
Target:  5'- -aGCGCAUCGcacucaaCGCGCGGcacgaucccgUGCg -3'
miRNA:   3'- gcCGCGUAGCauuuua-GCGCGCC----------ACG- -5'
26035 3' -52.3 NC_005342.2 + 12082 0.66 0.847251
Target:  5'- aGGCGCucuacgucaacgaggCGUugAAGGUUGCGcCGGUcGCg -3'
miRNA:   3'- gCCGCGua-------------GCA--UUUUAGCGC-GCCA-CG- -5'
26035 3' -52.3 NC_005342.2 + 33070 0.66 0.847251
Target:  5'- aCGGCGCgccGUCGUGGaacgccugcugcccGAUCGCGUagaacGGcgaUGCc -3'
miRNA:   3'- -GCCGCG---UAGCAUU--------------UUAGCGCG-----CC---ACG- -5'
26035 3' -52.3 NC_005342.2 + 720 0.66 0.841039
Target:  5'- cCGGCGCcUCGUuca---GCGCGGcagucGCc -3'
miRNA:   3'- -GCCGCGuAGCAuuuuagCGCGCCa----CG- -5'
26035 3' -52.3 NC_005342.2 + 24433 0.66 0.841039
Target:  5'- uCGGCgGCuaccc-GAAagGCGCGGUGCu -3'
miRNA:   3'- -GCCG-CGuagcauUUUagCGCGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 47798 0.66 0.841039
Target:  5'- gGGCGCAcgggcaGUGGAcUCGCGCcaGGcGCc -3'
miRNA:   3'- gCCGCGUag----CAUUUuAGCGCG--CCaCG- -5'
26035 3' -52.3 NC_005342.2 + 43162 0.66 0.841039
Target:  5'- aCGcGCGCAUCGcgcgcUUGCGCGccGCa -3'
miRNA:   3'- -GC-CGCGUAGCauuuuAGCGCGCcaCG- -5'
26035 3' -52.3 NC_005342.2 + 21308 0.66 0.834714
Target:  5'- cCGGCGCgAUCacgcucacgaGCgGCGGUGCg -3'
miRNA:   3'- -GCCGCG-UAGcauuuuag--CG-CGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 4706 0.66 0.83197
Target:  5'- aGGCGCGgucaUCGUcgagauacgccAGAAUCGCuuuggcGUGGUGg -3'
miRNA:   3'- gCCGCGU----AGCA-----------UUUUAGCG------CGCCACg -5'
26035 3' -52.3 NC_005342.2 + 34091 0.66 0.830129
Target:  5'- -cGCGCAgccCGUGccggccgacuUCGCGCGGcGCg -3'
miRNA:   3'- gcCGCGUa--GCAUuuu-------AGCGCGCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 17399 0.66 0.82268
Target:  5'- aGGCGCucgacgCGUucua-CGaCGCGGUGUc -3'
miRNA:   3'- gCCGCGua----GCAuuuuaGC-GCGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 1952 0.66 0.82268
Target:  5'- cCGGCGaUAUCGUGccAGUUGU-CGGUGUa -3'
miRNA:   3'- -GCCGC-GUAGCAUu-UUAGCGcGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 44761 0.66 0.82268
Target:  5'- gCGGCGCGcagaCGcUGAAcacCGCGCGGccGCg -3'
miRNA:   3'- -GCCGCGUa---GC-AUUUua-GCGCGCCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.