miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 5' -58.9 NC_005342.2 + 31969 0.66 0.482872
Target:  5'- uGGCaGCaGCGGCCgaaaGCCuuccggauGGCGCGg -3'
miRNA:   3'- gCCGaCG-CGUCGGaaagUGG--------UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 26383 0.66 0.482872
Target:  5'- uCGGUcGUGaUAGCgCUUggCugCAGCGCGg -3'
miRNA:   3'- -GCCGaCGC-GUCG-GAAa-GugGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 31408 0.66 0.472778
Target:  5'- aCGaGUUGUccgGCAuGCCUUUCGaCAGCGUGa -3'
miRNA:   3'- -GC-CGACG---CGU-CGGAAAGUgGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 29906 0.66 0.472778
Target:  5'- uCGGCUuGUGCAGCggcg-GgCAGCGCGa -3'
miRNA:   3'- -GCCGA-CGCGUCGgaaagUgGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 43348 0.66 0.462791
Target:  5'- aCGGCccgUGCGUccGGCCUgcacCACCAGgauCGCa -3'
miRNA:   3'- -GCCG---ACGCG--UCGGAaa--GUGGUC---GCGc -5'
26035 5' -58.9 NC_005342.2 + 20577 0.66 0.462791
Target:  5'- gGGUcGCGCcguGGUgUUUCugCAGgCGCGg -3'
miRNA:   3'- gCCGaCGCG---UCGgAAAGugGUC-GCGC- -5'
26035 5' -58.9 NC_005342.2 + 5517 0.66 0.462791
Target:  5'- uGGCcgGCGaCGGCUUggCGCgAGUGCa -3'
miRNA:   3'- gCCGa-CGC-GUCGGAaaGUGgUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 17738 0.66 0.462791
Target:  5'- aGGUggUGCGCaagcauucAGCCgg-CGCC-GCGCGg -3'
miRNA:   3'- gCCG--ACGCG--------UCGGaaaGUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 5139 0.66 0.453898
Target:  5'- uCGaGCaGCGCAGCUUgcgccugauugaacaUCGCCugcaGGCGCGg -3'
miRNA:   3'- -GC-CGaCGCGUCGGAa--------------AGUGG----UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 14210 0.66 0.452915
Target:  5'- aCGGCgUGCGCGcgcGCCUcuUUCgaGCCgAGCgGCGg -3'
miRNA:   3'- -GCCG-ACGCGU---CGGA--AAG--UGG-UCG-CGC- -5'
26035 5' -58.9 NC_005342.2 + 14336 0.66 0.452915
Target:  5'- gCGGCaugcuUGCGCuucaGGUCggcgaUCGCCuGCGCGg -3'
miRNA:   3'- -GCCG-----ACGCG----UCGGaa---AGUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 7822 0.66 0.452915
Target:  5'- gCGGcCUGCGcCGGCCaUUUCcaGCUcGCGCu -3'
miRNA:   3'- -GCC-GACGC-GUCGG-AAAG--UGGuCGCGc -5'
26035 5' -58.9 NC_005342.2 + 11318 0.66 0.452915
Target:  5'- aGGCgGCGCGGUUcgucgUCACCuugccGCGCu -3'
miRNA:   3'- gCCGaCGCGUCGGaa---AGUGGu----CGCGc -5'
26035 5' -58.9 NC_005342.2 + 33597 0.66 0.451934
Target:  5'- uGGCgaccGCGCAGgCgaUCGCCgaccugaAGCGCa -3'
miRNA:   3'- gCCGa---CGCGUCgGaaAGUGG-------UCGCGc -5'
26035 5' -58.9 NC_005342.2 + 32009 0.66 0.443156
Target:  5'- gCGGCgaugucgacgUGCGuCAGCaggucggUCACgAGCGCGu -3'
miRNA:   3'- -GCCG----------ACGC-GUCGgaa----AGUGgUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 8754 0.66 0.443156
Target:  5'- uGGCgaaGuCGCcggcaauGCCUUgCGCCGGCGUGa -3'
miRNA:   3'- gCCGa--C-GCGu------CGGAAaGUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 44778 0.66 0.433516
Target:  5'- gCGGC-GCGCcgGGCCggcUCACCGGCc-- -3'
miRNA:   3'- -GCCGaCGCG--UCGGaa-AGUGGUCGcgc -5'
26035 5' -58.9 NC_005342.2 + 44149 0.66 0.433516
Target:  5'- cCGGCgcgugcgagGCGCuuGGCCU---GCCGGUGCa -3'
miRNA:   3'- -GCCGa--------CGCG--UCGGAaagUGGUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 8906 0.67 0.423999
Target:  5'- gCGGCUucguucgcgccgGCGCuGUCcaUCGCguGCGCGg -3'
miRNA:   3'- -GCCGA------------CGCGuCGGaaAGUGguCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 14622 0.67 0.414608
Target:  5'- aCGGCUGCGCAGUUUg---UgAGCGUa -3'
miRNA:   3'- -GCCGACGCGUCGGAaaguGgUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.