miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 3' -60 NC_005345.2 + 12651 0.66 0.46586
Target:  5'- cGGGGCGcggucggccGCCGUugGCGUaCCcGCCgggUCGg -3'
miRNA:   3'- -CCCCGU---------CGGCAugUGUA-GGaCGG---GGC- -5'
26255 3' -60 NC_005345.2 + 25092 0.66 0.46586
Target:  5'- -cGGCucGCCGUACGCGUCCca-UCCGu -3'
miRNA:   3'- ccCCGu-CGGCAUGUGUAGGacgGGGC- -5'
26255 3' -60 NC_005345.2 + 42870 0.66 0.465859
Target:  5'- -aGGCGGCCccGCACGUgCUGUgggaCCCGu -3'
miRNA:   3'- ccCCGUCGGcaUGUGUAgGACG----GGGC- -5'
26255 3' -60 NC_005345.2 + 9926 0.66 0.465859
Target:  5'- cGGGGCAGUCG---GCGUCg-GCCCg- -3'
miRNA:   3'- -CCCCGUCGGCaugUGUAGgaCGGGgc -5'
26255 3' -60 NC_005345.2 + 49144 0.66 0.465859
Target:  5'- cGGGgGGCCGUugACucCCUGaCCUGc -3'
miRNA:   3'- cCCCgUCGGCAugUGuaGGACgGGGC- -5'
26255 3' -60 NC_005345.2 + 48699 0.66 0.464882
Target:  5'- aGGGGCGgguaugcGCCacggacccgcccGUACuACGUCC-GCCCCc -3'
miRNA:   3'- -CCCCGU-------CGG------------CAUG-UGUAGGaCGGGGc -5'
26255 3' -60 NC_005345.2 + 47154 0.66 0.460012
Target:  5'- gGGGGC-GCUGUgagcgccgccucgcgGCACugccaGUUCUGCCCgGa -3'
miRNA:   3'- -CCCCGuCGGCA---------------UGUG-----UAGGACGGGgC- -5'
26255 3' -60 NC_005345.2 + 17578 0.66 0.456136
Target:  5'- -cGGCagagcugcaucaGGUCGUGCGCGUCCU-CCUCGc -3'
miRNA:   3'- ccCCG------------UCGGCAUGUGUAGGAcGGGGC- -5'
26255 3' -60 NC_005345.2 + 17156 0.66 0.450354
Target:  5'- cGGGGCGGUCGUGCcgacgggggcgGCGuagaagucggcgccuUCCcacaGCCUCGg -3'
miRNA:   3'- -CCCCGUCGGCAUG-----------UGU---------------AGGa---CGGGGC- -5'
26255 3' -60 NC_005345.2 + 47360 0.66 0.446523
Target:  5'- gGGGGUacGGUCGgucgaGCggCCUGCCCUc -3'
miRNA:   3'- -CCCCG--UCGGCaug--UGuaGGACGGGGc -5'
26255 3' -60 NC_005345.2 + 1190 0.66 0.437023
Target:  5'- cGGGCGGCUcgGCA-GUCCgGCCCgCGg -3'
miRNA:   3'- cCCCGUCGGcaUGUgUAGGaCGGG-GC- -5'
26255 3' -60 NC_005345.2 + 13981 0.66 0.437023
Target:  5'- cGGGCuugagcGCCGacuucCACAgCCaUGCCCCGa -3'
miRNA:   3'- cCCCGu-----CGGCau---GUGUaGG-ACGGGGC- -5'
26255 3' -60 NC_005345.2 + 44665 0.66 0.437023
Target:  5'- uGGGCAcggcucgucgaGCCGgACACGgccgCCggGCCCCc -3'
miRNA:   3'- cCCCGU-----------CGGCaUGUGUa---GGa-CGGGGc -5'
26255 3' -60 NC_005345.2 + 40370 0.66 0.437023
Target:  5'- gGGGGCGaucaCCGcGCuCAUCCUGCgcagccucCCCGa -3'
miRNA:   3'- -CCCCGUc---GGCaUGuGUAGGACG--------GGGC- -5'
26255 3' -60 NC_005345.2 + 20427 0.66 0.437023
Target:  5'- uGGGC-GCCGUA-----CCUGCCCCc -3'
miRNA:   3'- cCCCGuCGGCAUguguaGGACGGGGc -5'
26255 3' -60 NC_005345.2 + 27696 0.66 0.437023
Target:  5'- cGGGCGcGCCG-ACACGgcagcCCUGCaaccccuaCCCGa -3'
miRNA:   3'- cCCCGU-CGGCaUGUGUa----GGACG--------GGGC- -5'
26255 3' -60 NC_005345.2 + 2539 0.66 0.437023
Target:  5'- cGGGGCAcCCG---GCG-CCgGCCCCGa -3'
miRNA:   3'- -CCCCGUcGGCaugUGUaGGaCGGGGC- -5'
26255 3' -60 NC_005345.2 + 43951 0.66 0.427641
Target:  5'- cGGGcCGGCCGUGCcgauGCGUgCaGCCCgGc -3'
miRNA:   3'- cCCC-GUCGGCAUG----UGUAgGaCGGGgC- -5'
26255 3' -60 NC_005345.2 + 41585 0.66 0.42485
Target:  5'- cGGGCGugcucggucgugauGCCGUGCACggCCgucGCaCCCu -3'
miRNA:   3'- cCCCGU--------------CGGCAUGUGuaGGa--CG-GGGc -5'
26255 3' -60 NC_005345.2 + 17329 0.66 0.418379
Target:  5'- -cGGguGCaCGcACGCAUCCcgGaCCCCGa -3'
miRNA:   3'- ccCCguCG-GCaUGUGUAGGa-C-GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.